RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 NECTIN1Q15223 517 aa27.54■■■□□ 2
SMPD3-202ENST00000561749 IQCA1Q86XH1 822 aa27.54■■■□□ 2
SMPD3-202ENST00000561749 GTF3C2Q8WUA4 911 aaPredicted RBP27.54■■■□□ 2
SMPD3-202ENST00000561749 MCCP23508 829 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 ERVK-9P63128 1117 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 ERVK-24P63145 666 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 Q3C1V9 767 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 RALYLQ86SE5 291 aaKnown RBP27.53■■■□□ 2
SMPD3-202ENST00000561749 GPRC5AQ8NFJ5 357 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 ZSCAN10Q96SZ4 725 aaPredicted RBP27.53■■■□□ 2
SMPD3-202ENST00000561749 HOXC10Q9NYD6 342 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 BTBD7Q9P203 1132 aa27.53■■■□□ 2
SMPD3-202ENST00000561749 TNKSO95271 1327 aa27.52■■■□□ 2
SMPD3-202ENST00000561749 FCGRTP55899 365 aa27.52■■■□□ 2
SMPD3-202ENST00000561749 NCOA7Q8NI08 942 aa27.52■■■□□ 2
SMPD3-202ENST00000561749 UBAC1Q9BSL1 405 aa27.52■■■□□ 2
SMPD3-202ENST00000561749 RABGAP1Q9Y3P9 1069 aa27.52■■■□□ 2
SMPD3-202ENST00000561749 BMP3P12645 472 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 SLC1A4P43007 532 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 NT5C2P49902 561 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 ARHGEF6Q15052 776 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 LBX2Q6XYB7 198 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 CHST3Q7LGC8 479 aa27.51■■□□□ 1.99
SMPD3-202ENST00000561749 ENAHQ8N8S7 591 aaPredicted RBP27.51■■□□□ 1.99
SMPD3-202ENST00000561749 CCDC96Q2M329 555 aa27.5■■□□□ 1.99
SMPD3-202ENST00000561749 KCTD1Q719H9 257 aa27.5■■□□□ 1.99
SMPD3-202ENST00000561749 TTC14Q96N46 770 aa27.5■■□□□ 1.99
SMPD3-202ENST00000561749 SLF1Q9BQI6 1058 aa27.5■■□□□ 1.99
SMPD3-202ENST00000561749 PPP1R9AQ9ULJ8 1098 aa27.5■■□□□ 1.99
SMPD3-202ENST00000561749 MYPNQ86TC9 1320 aa27.49■■□□□ 1.99
SMPD3-202ENST00000561749 TNPO2O14787 897 aaKnown RBP27.49■■□□□ 1.99
SMPD3-202ENST00000561749 CCDC178Q5BJE1 867 aa27.49■■□□□ 1.99
SMPD3-202ENST00000561749 DGKHQ86XP1 1220 aa27.49■■□□□ 1.99
SMPD3-202ENST00000561749 GMCL1Q96IK5 515 aa27.49■■□□□ 1.99
SMPD3-202ENST00000561749 PORCNQ9H237 461 aa27.49■■□□□ 1.99
SMPD3-202ENST00000561749 PLXNB2O15031 1838 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 TMEM232C9JQI7 657 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 REC8O95072 547 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 COL9A3Q14050 684 aaPredicted RBP27.48■■□□□ 1.99
SMPD3-202ENST00000561749 PLS1Q14651 629 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 RNF20Q5VTR2 975 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 FBXO46Q6PJ61 603 aaPredicted RBP27.48■■□□□ 1.99
SMPD3-202ENST00000561749 MB21D2Q8IYB1 491 aaPredicted RBP27.48■■□□□ 1.99
SMPD3-202ENST00000561749 KIFC2Q96AC6 838 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 FEM1BQ9UK73 627 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 PTPN22Q9Y2R2 807 aa27.48■■□□□ 1.99
SMPD3-202ENST00000561749 FRMPD2Q68DX3 1309 aaPredicted RBP27.47■■□□□ 1.99
SMPD3-202ENST00000561749 ANTXR2P58335 489 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 IKQ13123 557 aaPredicted RBP27.47■■□□□ 1.99
SMPD3-202ENST00000561749 PKN2Q16513 984 aaKnown RBP27.47■■□□□ 1.99
SMPD3-202ENST00000561749 DCAF4Q8WV16 495 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 KAT14Q9H8E8 782 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 SRRDQ9UH36 339 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 GABRQQ9UN88 632 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 PTCH2Q9Y6C5 1203 aa27.47■■□□□ 1.99
SMPD3-202ENST00000561749 IFIT3O14879 490 aaKnown RBP27.46■■□□□ 1.99
SMPD3-202ENST00000561749 PRKCZQ05513 592 aa27.46■■□□□ 1.99
SMPD3-202ENST00000561749 SEC23AQ15436 765 aa27.46■■□□□ 1.99
SMPD3-202ENST00000561749 WDR78Q5VTH9 848 aa27.46■■□□□ 1.99
SMPD3-202ENST00000561749 CCAR1Q8IX12 1150 aaKnown RBP27.46■■□□□ 1.99
SMPD3-202ENST00000561749 RASEFQ8IZ41 740 aa27.46■■□□□ 1.99
SMPD3-202ENST00000561749 GPCPD1Q9NPB8 672 aa27.46■■□□□ 1.99
SMPD3-202ENST00000561749 VWA5AO00534 786 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 GNRH1P01148 92 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 PDHBP11177 359 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 HOXD10P28358 340 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 TMEM132BQ14DG7 1078 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 IFIT1BQ5T764 474 aaKnown RBP27.45■■□□□ 1.98
SMPD3-202ENST00000561749 TTBK2Q6IQ55 1244 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 MB21D1Q8N884 522 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 PRPF38AQ8NAV1 312 aaKnown RBP27.45■■□□□ 1.98
SMPD3-202ENST00000561749 PNMA1Q8ND90 353 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 ANKS1AQ92625 1134 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 COA7Q96BR5 231 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 ADAMTS5Q9UNA0 930 aa27.45■■□□□ 1.98
SMPD3-202ENST00000561749 STAT2P52630 851 aa27.44■■□□□ 1.98
SMPD3-202ENST00000561749 CCNA1P78396 465 aa27.44■■□□□ 1.98
SMPD3-202ENST00000561749 ABHD8Q96I13 439 aa27.44■■□□□ 1.98
SMPD3-202ENST00000561749 MOV10L1Q9BXT6 1211 aaKnown RBP27.44■■□□□ 1.98
SMPD3-202ENST00000561749 SPATC1LQ9H0A9 340 aa27.44■■□□□ 1.98
SMPD3-202ENST00000561749 SENP2Q9HC62 589 aa27.44■■□□□ 1.98
SMPD3-202ENST00000561749 CWC22Q9HCG8 908 aaKnown RBP27.44■■□□□ 1.98
SMPD3-202ENST00000561749 MAPK4P31152 587 aa27.43■■□□□ 1.98
SMPD3-202ENST00000561749 HPS5Q9UPZ3 1129 aa27.43■■□□□ 1.98
SMPD3-202ENST00000561749 ERICH2A1L162 156 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 PRC1O43663 620 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 SLC16A2P36021 539 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 ADCK5Q3MIX3 580 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 TMEM67Q5HYA8 995 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 GPR142Q7Z601 462 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 FAM160B2Q86V87 743 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 REPS2Q8NFH8 660 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 CHURC1Q8WUH1 139 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 GPHNQ9NQX3 736 aaPredicted RBP27.42■■□□□ 1.98
SMPD3-202ENST00000561749 CTDP1Q9Y5B0 961 aaPredicted RBP27.42■■□□□ 1.98
SMPD3-202ENST00000561749 GTF3C3Q9Y5Q9 886 aa27.42■■□□□ 1.98
SMPD3-202ENST00000561749 GOLGA8HP0CJ92 632 aa27.41■■□□□ 1.98
SMPD3-202ENST00000561749 ZKSCAN1P17029 563 aaPredicted RBP27.41■■□□□ 1.98
SMPD3-202ENST00000561749 HSPA4P34932 840 aa27.41■■□□□ 1.98
SMPD3-202ENST00000561749 SLC4A3P48751 1232 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms