RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 BEND4Q6ZU67 534 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 CLEC10AQ8IUN9 316 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 FAM20CQ8IXL6 584 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 EPS8L3Q8TE67 593 aaKnown RBP4.59□□□□□ -1.67
SPG11-225ENST00000561391 CCDC74AQ96AQ1 378 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 ZNF428Q96B54 188 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 SPACA7Q96KW9 195 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 LACRTQ9GZZ8 138 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 CHRDQ9H2X0 955 aa4.59□□□□□ -1.67
SPG11-225ENST00000561391 CCDC88AQ3V6T2 1871 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 ARFGEF1Q9Y6D6 1849 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 USP54Q70EL1 1684 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 ABCC6O95255 1503 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 IQCA1LA6NCM1 817 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 GAS2O43903 313 aaKnown RBP4.58□□□□□ -1.68
SPG11-225ENST00000561391 GADD45BO75293 160 aaPredicted RBP4.58□□□□□ -1.68
SPG11-225ENST00000561391 TRPA1O75762 1119 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 BMP3P12645 472 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 LCE5AQ5TCM9 118 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 PI16Q6UXB8 463 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.58□□□□□ -1.68
SPG11-225ENST00000561391 TP53INP2Q8IXH6 220 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 POU5F2Q8N7G0 328 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 LINC00116Q8NCU8 138 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 FAM161BQ96MY7 647 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 FAM83CQ9BQN1 747 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 PCGF6Q9BYE7 350 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 DNAJC25Q9H1X3 360 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 NPHS2Q9NP85 383 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 DDX21Q9NR30 783 aaKnown RBP eCLIP4.58□□□□□ -1.68
SPG11-225ENST00000561391 LATS2Q9NRM7 1088 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 RAPGEFL1Q9UHV5 662 aa4.58□□□□□ -1.68
SPG11-225ENST00000561391 KDM6AO15550 1401 aaPredicted RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 NFKBIEO00221 500 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 SMNDC1O75940 238 aaKnown RBP eCLIP4.57□□□□□ -1.68
SPG11-225ENST00000561391 EDN3P14138 238 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 ACPPP15309 386 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 CDC27P30260 824 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 HOXA10P31260 410 aaPredicted RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 ZEB1P37275 1124 aaPredicted RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.57□□□□□ -1.68
SPG11-225ENST00000561391 CST9Q5W186 159 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 CEP135Q66GS9 1140 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 ALG1LQ6GMV1 187 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 KIAA1211Q6ZU35 1233 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 FBXO33Q7Z6M2 555 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 KCNH5Q8NCM2 988 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 ZCRB1Q8TBF4 217 aaKnown RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 ANKRD24Q8TF21 1146 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 UBASH3BQ8TF42 649 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 LTV1Q96GA3 475 aaPredicted RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 MFSD14AQ96MC6 490 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 DUSP9Q99956 384 aaKnown RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 ATG3Q9NT62 314 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 RNF19AQ9NV58 838 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 KCNK4Q9NYG8 393 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 LEMD3Q9Y2U8 911 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 BRCA1P38398 1863 aaKnown RBP4.57□□□□□ -1.68
SPG11-225ENST00000561391 KIF13BQ9NQT8 1826 aa4.57□□□□□ -1.68
SPG11-225ENST00000561391 PIK3C2GO75747 1445 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 CPSF1Q10570 1443 aaKnown RBP4.56□□□□□ -1.68
SPG11-225ENST00000561391 PALLDQ8WX93 1383 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 C4BP0C0L5 1744 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 LTBP1Q14766 1721 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 TRAF5O00463 557 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 HOXD8P13378 290 aaPredicted RBP4.56□□□□□ -1.68
SPG11-225ENST00000561391 GYS1P13807 737 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 ZNF16P17020 682 aaPredicted RBP4.56□□□□□ -1.68
SPG11-225ENST00000561391 EPHX2P34913 555 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 RFC4P35249 363 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 ATP11AP98196 1134 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 COL19A1Q14993 1142 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 ANKRD34AQ69YU3 496 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 FDX2Q6P4F2 183 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 CTU1Q7Z7A3 348 aaKnown RBP4.56□□□□□ -1.68
SPG11-225ENST00000561391 VSIG10LQ86VR7 867 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 GALNT12Q8IXK2 581 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 FBXL6Q8N531 539 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 KLHL23Q8NBE8 558 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 FBXL18Q96ME1 805 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 OSMRQ99650 979 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 OSBPL1AQ9BXW6 950 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 EHD4Q9H223 541 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 PARP2Q9UGN5 583 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 HACL1Q9UJ83 578 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 SALL4Q9UJQ4 1053 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 HIF3AQ9Y2N7 669 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 C5P01031 1676 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 QRICH2Q9H0J4 1663 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 ADAMTS7Q9UKP4 1686 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 MEGF6O75095 1541 aa4.56□□□□□ -1.68
SPG11-225ENST00000561391 RBM47A0AV96 593 aaKnown RBP4.55□□□□□ -1.68
SPG11-225ENST00000561391 FSCN2O14926 492 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 PRPF40AO75400 957 aaKnown RBP4.55□□□□□ -1.68
SPG11-225ENST00000561391 PREPP48147 710 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 PSMD2Q13200 908 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 SYNE4Q8N205 404 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 TTLL6Q8N841 843 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 CEP120Q8N960 986 aa4.55□□□□□ -1.68
SPG11-225ENST00000561391 ASAP3Q8TDY4 903 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms