RNA–Protein interactions for RNA: ENST00000561055.1

RABGGTA-221, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 2

Gene RABGGTA, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-221ENST00000561055 TMEM87BQ96K49 555 aa11.32□□□□□ -0.6
RABGGTA-221ENST00000561055 ZKSCAN3Q9BRR0 538 aa11.32□□□□□ -0.6
RABGGTA-221ENST00000561055 UBAC1Q9BSL1 405 aa11.32□□□□□ -0.6
RABGGTA-221ENST00000561055 SNX14Q9Y5W7 946 aa11.32□□□□□ -0.6
RABGGTA-221ENST00000561055 BAZ2BQ9UIF8 2168 aaKnown RBP11.32□□□□□ -0.6
RABGGTA-221ENST00000561055 FKTNO75072 461 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 DSG3P32926 999 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 LIFRP42702 1097 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 LBX1P52954 281 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 EXOSC10Q01780 885 aaKnown RBP11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 SP3Q02447 781 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 SART3Q15020 963 aaKnown RBP11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 FAM110CQ1W6H9 321 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 ADCK5Q3MIX3 580 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 FAM83BQ5T0W9 1011 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 SLFN13Q68D06 897 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 SPICE1Q8N0Z3 855 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 LRRC47Q8N1G4 583 aaKnown RBP11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 TMTC2Q8N394 836 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 FBXL16Q8N461 479 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 SMCR8Q8TEV9 937 aaPredicted RBP11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 DCAF4Q8WV16 495 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 NEK1Q96PY6 1258 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 TM6SF1Q9BZW5 370 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 RBPJLQ9UBG7 517 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 FEM1BQ9UK73 627 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 PLXNA1Q9UIW2 1896 aa11.31□□□□□ -0.6
RABGGTA-221ENST00000561055 ERICH2A1L162 156 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 SPDYE16A6NNV3 312 aaPredicted RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 IFIT3O14879 490 aaKnown RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 PRC1O43663 620 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 SEC24BO95487 1268 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 FDX1P10109 184 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 PDHBP11177 359 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 BMP3P12645 472 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 ANAPC15P60006 121 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 COL9A3Q14050 684 aaPredicted RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 IFIT1BQ5T764 474 aaKnown RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 BTNL9Q6UXG8 535 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 DHX32Q7L7V1 743 aaKnown RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 MB21D1Q8N884 522 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 PRPF38AQ8NAV1 312 aaKnown RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 PNMA1Q8ND90 353 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 ZNF296Q8WUU4 475 aaPredicted RBP11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 TANGO6Q9C0B7 1094 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 CPA4Q9UI42 421 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 TSKSQ9UJT2 592 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 PPP1R9AQ9ULJ8 1098 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 RABGAP1Q9Y3P9 1069 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 ZNF236Q9UL36 1845 aa11.3□□□□□ -0.6
RABGGTA-221ENST00000561055 FLOT1O75955 427 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 GNRH1P01148 92 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 MCCP23508 829 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 SLC1A4P43007 532 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 LACTBP83111 547 aaPredicted RBP11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 WTAPQ15007 396 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 GPATCH4Q5T3I0 446 aaKnown RBP11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 FAM160B2Q86V87 743 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 CHURC1Q8WUH1 139 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 ERO1AQ96HE7 468 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 MAP3K14Q99558 947 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 AGXT2Q9BYV1 514 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 KAT14Q9H8E8 782 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 LY9Q9HBG7 655 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 TXNRD2Q9NNW7 524 aa11.29□□□□□ -0.6
RABGGTA-221ENST00000561055 VWA5AO00534 786 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 SH2B2O14492 632 aaPredicted RBP11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ATP2A1O14983 1001 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 CNMDO75829 334 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 PSMA5P28066 241 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 STAT2P52630 851 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ERVK-9P63128 1117 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ERVK-24P63145 666 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ZNF543Q08ER8 600 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 TROAPQ12815 778 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 TMEM67Q5HYA8 995 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 CHST3Q7LGC8 479 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 SGMS1Q86VZ5 419 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ANKRD13CQ8N6S4 541 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 REPS2Q8NFH8 660 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 GPRC5AQ8NFJ5 357 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 NUP88Q99567 741 aaPredicted RBP11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 SLF1Q9BQI6 1058 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 ZSWIM6Q9HCJ5 1215 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 FBXO28Q9NVF7 368 aa11.28□□□□□ -0.6
RABGGTA-221ENST00000561055 RBBP6Q7Z6E9 1792 aaKnown RBP11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 TMEM232C9JQI7 657 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 RAD21O60216 631 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 OAZ1P54368 228 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 CAP1Q01518 475 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 Q3C1V9 767 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 ASPRV1Q53RT3 343 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 BLOC1S2Q6QNY1 142 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 ATG4CQ96DT6 458 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 JAKMIP1Q96N16 626 aaKnown RBP11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 SLC38A10Q9HBR0 1119 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 SENP2Q9HC62 589 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 BTBD7Q9P203 1132 aa11.27□□□□□ -0.61
RABGGTA-221ENST00000561055 PALM3A6NDB9 673 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms