RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 GMCL1Q96IK5 515 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 ZNF341Q9BYN7 854 aa13.08□□□□□ -0.32
SNX1-212ENST00000560861 ZSCAN16Q9H4T2 348 aaPredicted RBP13.08□□□□□ -0.32
SNX1-212ENST00000560861 RBM27Q9P2N5 1060 aaKnown RBP13.08□□□□□ -0.32
SNX1-212ENST00000560861 hCG_1642624A0A1W2PR95 340 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 DDX11L8A8MPP1 907 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 CTNND1O60716 968 aaKnown RBP13.07□□□□□ -0.32
SNX1-212ENST00000560861 NDUFB10O96000 172 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 ASNSP08243 561 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 SCG2P13521 617 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 U2AF2P26368 475 aaKnown RBP eCLIP13.07□□□□□ -0.323e-7■■■■□ 21.1
SNX1-212ENST00000560861 INPP5BP32019 993 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 DSG3P32926 999 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 DCAF15Q66K64 600 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 SLFN13Q68D06 897 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 FAM173BQ6P4H8 233 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 HOOK2Q96ED9 719 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 MTMR8Q96EF0 704 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 CPVLQ9H3G5 476 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 TAF1DQ9H5J8 278 aaPredicted RBP13.07□□□□□ -0.32
SNX1-212ENST00000560861 LMBRD1Q9NUN5 540 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.07□□□□□ -0.32
SNX1-212ENST00000560861 ATP6V1DQ9Y5K8 247 aa13.07□□□□□ -0.32
SNX1-212ENST00000560861 FRMPD2Q68DX3 1309 aaPredicted RBP13.07□□□□□ -0.32
SNX1-212ENST00000560861 PARP14Q460N5 1801 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 F5H6K3 240 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 MMP1P03956 469 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 ECE1P42892 770 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 ATP2B2Q01814 1243 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 DNM1Q05193 864 aaKnown RBP13.06□□□□□ -0.32
SNX1-212ENST00000560861 KLRC3Q07444 240 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 KIAA1755Q5JYT7 1200 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 NOL9Q5SY16 702 aaKnown RBP13.06□□□□□ -0.32
SNX1-212ENST00000560861 GPATCH4Q5T3I0 446 aaKnown RBP13.06□□□□□ -0.32
SNX1-212ENST00000560861 PRAMEF18Q5VWM3 479 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 TTBK2Q6IQ55 1244 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 FAM177A1Q8N128 213 aaPredicted RBP13.06□□□□□ -0.32
SNX1-212ENST00000560861 PHF20Q9BVI0 1012 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 MTMR7Q9Y216 660 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 CNPY2Q9Y2B0 182 aa13.06□□□□□ -0.32
SNX1-212ENST00000560861 PTPRFP10586 1907 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 ADM5C9JUS6 153 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 AKAP17AQ02040 695 aaKnown RBP13.05□□□□□ -0.32
SNX1-212ENST00000560861 MCTP1Q6DN14 999 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 TYW1BQ6NUM6 668 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 BTNL9Q6UXG8 535 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 DLK2Q6UY11 383 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 BRAPQ7Z569 592 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 CCDC84Q86UT8 332 aaPredicted RBP13.05□□□□□ -0.32
SNX1-212ENST00000560861 TNFRSF25Q93038 417 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 KLRG1Q96E93 195 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 GLIS2Q9BZE0 524 aaPredicted RBP13.05□□□□□ -0.32
SNX1-212ENST00000560861 UBA5Q9GZZ9 404 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 ARHGEF10LQ9HCE6 1279 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 GPCPD1Q9NPB8 672 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 SH3GLB2Q9NR46 395 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 VPS54Q9P1Q0 977 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 KCNJ14Q9UNX9 436 aa13.05□□□□□ -0.32
SNX1-212ENST00000560861 IQCA1LA6NCM1 817 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 STXBP3O00186 592 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 USP2O75604 605 aaPredicted RBP13.04□□□□□ -0.32
SNX1-212ENST00000560861 FOXD4L6Q3SYB3 417 aaPredicted RBP13.04□□□□□ -0.32
SNX1-212ENST00000560861 SUPT20HL1Q3ZLR7 823 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 WWC2Q6AWC2 1192 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 FOXD4L3Q6VB84 417 aaPredicted RBP13.04□□□□□ -0.32
SNX1-212ENST00000560861 KCTD1Q719H9 257 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 DIS3L2Q8IYB7 885 aaKnown RBP13.04□□□□□ -0.32
SNX1-212ENST00000560861 SCYL3Q8IZE3 742 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.04□□□□□ -0.328e-11■□□□□ 8.9
SNX1-212ENST00000560861 DCPSQ96C86 337 aaKnown RBP13.04□□□□□ -0.32
SNX1-212ENST00000560861 PIGSQ96S52 555 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 WDR18Q9BV38 432 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 VCPKMTQ9H867 229 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 JMJD4Q9H9V9 463 aa13.04□□□□□ -0.32
SNX1-212ENST00000560861 RLFQ13129 1914 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 ADAMTS3O15072 1205 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 PTMSP20962 102 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 SLC1A4P43007 532 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 TRIM29Q14134 588 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 CCDC96Q2M329 555 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 MYSM1Q5VVJ2 828 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 ATL3Q6DD88 541 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 SULF1Q8IWU6 871 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 ADGRF4Q8IZF3 695 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 DAGLBQ8NCG7 672 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 ZNF526Q8TF50 670 aaPredicted RBP13.03□□□□□ -0.32
SNX1-212ENST00000560861 GPKOWQ92917 476 aaPredicted RBP eCLIP13.03□□□□□ -0.32
SNX1-212ENST00000560861 RRP36Q96EU6 259 aaKnown RBP13.03□□□□□ -0.32
SNX1-212ENST00000560861 NUP88Q99567 741 aaPredicted RBP13.03□□□□□ -0.32
SNX1-212ENST00000560861 KIAA1683Q9H0B3 1180 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 FOXP1Q9H334 677 aaPredicted RBP13.03□□□□□ -0.32
SNX1-212ENST00000560861 BARHL2Q9NY43 387 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 FZD1Q9UP38 647 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 ELP1O95163 1332 aa13.03□□□□□ -0.32
SNX1-212ENST00000560861 BTBD18B2RXH4 712 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 hCG_1984214I3L0E3 225 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 M0R2N6 131 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 PLA2G6O60733 806 aa13.02□□□□□ -0.33
SNX1-212ENST00000560861 PPP1R11O60927 126 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms