RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MROH8Q9H579 483 aa12.21□□□□□ -0.45
LDLR-214ENST00000560628 STAP2Q9UGK3 403 aa12.21□□□□□ -0.45
LDLR-214ENST00000560628 ZMYND8Q9ULU4 1186 aaPredicted RBP12.21□□□□□ -0.45
LDLR-214ENST00000560628 CEP290O15078 2479 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 MYH7P12883 1935 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 F5H6K3 240 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 KLRC3Q07444 240 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 PRAMEF19Q5SWL8 479 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 CCDC129Q6ZRS4 1044 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 NACAP1Q9BZK3 213 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 NYAP2Q9P242 653 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 DDX20Q9UHI6 824 aaKnown RBP12.2□□□□□ -0.46
LDLR-214ENST00000560628 ADAMTS5Q9UNA0 930 aa12.2□□□□□ -0.46
LDLR-214ENST00000560628 PFASO15067 1338 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 VWA5AO00534 786 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 NDUFB10O96000 172 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 FCER1AP12319 257 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 SYN1P17600 705 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 STAT3P40763 770 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 SLC4A3P48751 1232 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 HDAC1Q13547 482 aaPredicted RBP12.19□□□□□ -0.46
LDLR-214ENST00000560628 FAM47AQ5JRC9 791 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 ANO1Q5XXA6 986 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 CHMP4CQ96CF2 233 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 CEP95Q96GE4 821 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 NAPBQ9H115 298 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 ZNF287Q9HBT7 754 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 INCENPQ9NQS7 918 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 PCDH10Q9P2E7 1040 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 PPP1R9AQ9ULJ8 1098 aa12.19□□□□□ -0.46
LDLR-214ENST00000560628 SALL3Q9BXA9 1300 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 IGKV6D-41A0A0C4DH26 115 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 SLC25A27O95847 323 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 IGHA2P01877 340 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 PGK2P07205 417 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 COL6A1P12109 1028 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 PDE1AP54750 535 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 TFAP4Q01664 338 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 PPARAQ07869 468 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 OLFML2BQ68BL8 750 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 RIOX2Q8IUF8 465 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 MMP19Q99542 508 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 SENP6Q9GZR1 1112 aaPredicted RBP12.18□□□□□ -0.46
LDLR-214ENST00000560628 PRO3102Q9H379 93 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 SLC5A4Q9NY91 659 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 MTMR4Q9NYA4 1195 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 ROBO3Q96MS0 1386 aa12.18□□□□□ -0.46
LDLR-214ENST00000560628 MYH8P13535 1937 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 RLFQ13129 1914 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 TRIOBPQ9H2D6 2365 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
LDLR-214ENST00000560628 SLC3A2P08195 630 aaKnown RBP12.17□□□□□ -0.46
LDLR-214ENST00000560628 TSPY3P0CV98 308 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 TSPY8P0CW00 308 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 CYBAP13498 195 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 CTDSPL2Q05D32 466 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 PDE4BQ07343 736 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 LRRC26Q2I0M4 334 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 VPS53Q5VIR6 699 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 B4GALNT3Q6L9W6 998 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 ABRAQ8N0Z2 381 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 CPXCR1Q8N123 301 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 LRRC47Q8N1G4 583 aaKnown RBP12.17□□□□□ -0.46
LDLR-214ENST00000560628 REPS2Q8NFH8 660 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 KIFC2Q96AC6 838 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 EVI5LQ96CN4 794 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 MAML3Q96JK9 1138 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 SLF1Q9BQI6 1058 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 LNPKQ9C0E8 428 aa12.17□□□□□ -0.46
LDLR-214ENST00000560628 ZNF214Q9UL59 606 aaPredicted RBP12.17□□□□□ -0.46
LDLR-214ENST00000560628 FOXP2O15409 715 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 MSCO60682 206 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 TTLL1O95922 423 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 ATN1P54259 1190 aaPredicted RBP12.16□□□□□ -0.46
LDLR-214ENST00000560628 KCTD2Q14681 263 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 GJC2Q5T442 439 aaPredicted RBP12.16□□□□□ -0.46
LDLR-214ENST00000560628 SLFN13Q68D06 897 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 PRPF38AQ8NAV1 312 aaKnown RBP12.16□□□□□ -0.46
LDLR-214ENST00000560628 NEDD1Q8NHV4 660 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 MKL1Q969V6 931 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 ISY1Q9ULR0 285 aaKnown RBP12.16□□□□□ -0.46
LDLR-214ENST00000560628 RIPK3Q9Y572 518 aa12.16□□□□□ -0.46
LDLR-214ENST00000560628 CTDP1Q9Y5B0 961 aaPredicted RBP12.16□□□□□ -0.46
LDLR-214ENST00000560628 ZBED4O75132 1171 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 IGHDP01880 384 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 ZNF792Q3KQV3 632 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 SNRNP48Q6IEG0 339 aaKnown RBP12.15□□□□□ -0.46
LDLR-214ENST00000560628 EXOC6Q8TAG9 804 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 FAM227BQ96M60 508 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 GDF15Q99988 308 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 RAVER2Q9HCJ3 691 aaKnown RBP12.15□□□□□ -0.46
LDLR-214ENST00000560628 TACC3Q9Y6A5 838 aa12.15□□□□□ -0.46
LDLR-214ENST00000560628 TRIM6-TRIM34B2RNG4 842 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 SEPT4O43236 478 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 BMP3P12645 472 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 TAL1P17542 331 aaPredicted RBP12.14□□□□□ -0.47
LDLR-214ENST00000560628 MAGEA10P43363 369 aaPredicted RBP12.14□□□□□ -0.47
LDLR-214ENST00000560628 ARRDC4Q8NCT1 418 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 GMCL1P1Q8NEA9 526 aa12.14□□□□□ -0.47
LDLR-214ENST00000560628 RILPL2Q969X0 211 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms