RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	CCDC84	Q86UT8	332 aa	Predicted RBP	5.69	□□□□□ -1.5
SPG11-222	ENST00000560435	SYTL5	Q8TDW5	730 aa	Predicted RBP	5.69	□□□□□ -1.5
SPG11-222	ENST00000560435	LUC7L	Q9NQ29	371 aa	Known RBP	5.69	□□□□□ -1.5
SPG11-222	ENST00000560435	AK5	Q9Y6K8	562 aa		5.69	□□□□□ -1.5
SPG11-222	ENST00000560435	ZC3H12D	A2A288	527 aa	Known RBP	5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	ABLIM1	O14639	778 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	RPL10	P27635	214 aa	Known RBP	5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	CDR1	P51861	262 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	WAPL	Q7Z5K2	1190 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	TMEFF1	Q8IYR6	380 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	USHBP1	Q8N6Y0	703 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	MZB1	Q8WU39	189 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	CCDC74B	Q96LY2	380 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	HDAC8	Q9BY41	377 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	ASCC2	Q9H1I8	757 aa	Predicted RBP	5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	ZMYM5	Q9UJ78	669 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	PRR36	Q9H6K5	1346 aa		5.68	□□□□□ -1.5
SPG11-222	ENST00000560435	CILP	O75339	1184 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	PRPF40A	O75400	957 aa	Known RBP	5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	BPNT1	O95861	308 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	ERVFRD-1	P60508	538 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	EFEMP1	Q12805	493 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	NMI	Q13287	307 aa	Predicted RBP	5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	VMAC	Q2NL98	169 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	SPATS1	Q496A3	300 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	CNKSR3	Q6P9H4	555 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	CEP128	Q6ZU80	1094 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	FAM129C	Q86XR2	697 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	ZDHHC14	Q8IZN3	488 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	VWCE	Q96DN2	955 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	TLR6	Q9Y2C9	796 aa		5.67	□□□□□ -1.5
SPG11-222	ENST00000560435	FRMD5	Q7Z6J6	570 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	LINC01356	Q8N9X3	169 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	SYT8	Q8NBV8	401 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	DAGLB	Q8NCG7	672 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	PHC3	Q8NDX5	983 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	HHIPL1	Q96JK4	782 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	NOC4L	Q9BVI4	516 aa	Known RBP	5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	FOXP3	Q9BZS1	431 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	REV1	Q9UBZ9	1251 aa		5.66	□□□□□ -1.5
SPG11-222	ENST00000560435	TMEM82	A0PJX8	343 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	FAM221A	A4D161	298 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	CHURC1-FNTB	B4DL54	471 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	SDHB	P21912	280 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	PCBP3	P57721	371 aa	Known RBP	5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	MEI1	Q5TIA1	1274 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	BNC2	Q6ZN30	1099 aa	Predicted RBP	5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	ZNF655	Q8N720	491 aa	Predicted RBP	5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	TCTN2	Q96GX1	697 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	PLCD4	Q9BRC7	762 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	ADAM7	Q9H2U9	754 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	TMPRSS5	Q9H3S3	457 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	KLHL3	Q9UH77	587 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	TCFL5	Q9UL49	500 aa		5.65	□□□□□ -1.5
SPG11-222	ENST00000560435	ST13	P50502	369 aa	Known RBP	5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	RNF4	P78317	190 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	ZXDC	Q2QGD7	858 aa	Predicted RBP	5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	LDHD	Q86WU2	507 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	IGDCC3	Q8IVU1	814 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	PHACTR4	Q8IZ21	702 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	LINC00116	Q8NCU8	138 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	GATAD2B	Q8WXI9	593 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	KLHL14	Q9P2G3	628 aa		5.64	□□□□□ -1.51
SPG11-222	ENST00000560435	SSU72P8	A0A1W2PR75	194 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	HTR3B	O95264	441 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	MPO	P05164	745 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	RTP1	P59025	263 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	CHMP4BP1	P59074	171 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	LMNB2	Q03252	620 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	TMEM62	Q0P6H9	643 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	BBS9	Q3SYG4	887 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	TP53I13	Q8NBR0	393 aa	Predicted RBP	5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	KIF2C	Q99661	725 aa		5.63	□□□□□ -1.51
SPG11-222	ENST00000560435	DNAJA2	O60884	412 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	F13A1	P00488	732 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	GBP1	P32455	592 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	ARL4A	P40617	200 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	CAP1	Q01518	475 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	PLP2	Q04941	152 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	LAPTM5	Q13571	262 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	GALNT18	Q6P9A2	607 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	TMC6	Q7Z403	805 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	FCRL2	Q96LA5	508 aa	Predicted RBP	5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	PWWP2A	Q96N64	755 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	BDH2	Q9BUT1	245 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	TNFRSF10D	Q9UBN6	386 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	PCDHA5	Q9Y5H7	936 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	TAF6L	Q9Y6J9	622 aa		5.62	□□□□□ -1.51
SPG11-222	ENST00000560435	FADS2P1	A8MWK0	482 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	RGS13	O14921	159 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	SYP	P08247	313 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	CAMK2G	Q13555	558 aa	Predicted RBP	5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	TAF1C	Q15572	869 aa	Predicted RBP	5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	HSF5	Q4G112	596 aa	Predicted RBP	5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	ZPBP2	Q6X784	338 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	TMC3	Q7Z5M5	1100 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	ARID3A	Q99856	593 aa		5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	DUSP9	Q99956	384 aa	Known RBP	5.61	□□□□□ -1.51
SPG11-222	ENST00000560435	RNF19A	Q9NV58	838 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms