RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 NID2Q14112 1375 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 SSC5DA1L4H1 1573 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 IGKV6D-41A0A0C4DH26 115 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 PTPDC1A2A3K4 754 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 FAM196BA6NMK8 535 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 FAM155AB1AL88 458 aaPredicted RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 USP2O75604 605 aaPredicted RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 GH2P01242 217 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 PARP1P09874 1014 aaKnown RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 IFNAR1P17181 557 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 XBP1P17861 261 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 CAP2P40123 477 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 TM4SF4P48230 202 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 NOVP48745 357 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 HUNKP57058 714 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 ICA1Q05084 483 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 TROAPQ12815 778 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 LARP1BQ659C4 914 aaKnown RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 RCSD1Q6JBY9 416 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 CCDC144CPQ8IYA2 1237 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 RGS22Q8NE09 1264 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 NSUN7Q8NE18 718 aaKnown RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 NKX2-3Q8TAU0 364 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 MKL1Q969V6 931 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 MYL10Q9BUA6 226 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 SENP2Q9HC62 589 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 NCOA5Q9HCD5 579 aaKnown RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 ORC3Q9UBD5 711 aaPredicted RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 ATP6V1DQ9Y5K8 247 aa7.47□□□□□ -1.21
SPG11-221ENST00000560299 WDR33Q9C0J8 1336 aaKnown RBP7.47□□□□□ -1.21
SPG11-221ENST00000560299 SPDYE5A6NIY4 337 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 H3BQV1 296 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 STX6O43752 255 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 RAD21O60216 631 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 GDF11O95390 407 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 ALDH1A1P00352 501 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 EEF2P13639 858 aaKnown RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 RXRAP19793 462 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 SMARCA1P28370 1054 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 ADD1P35611 737 aaKnown RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 VEGFBP49765 207 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 MAP3K9P80192 1104 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 PPATQ06203 517 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 TRIM29Q14134 588 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 SEPT2Q15019 361 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 ASPRV1Q53RT3 343 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 GPATCH4Q5T3I0 446 aaKnown RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 NBPF12Q5TAG4 269 aaPredicted RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 IFFO2Q5TF58 517 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 RAB11FIP4Q86YS3 637 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 SMARCC2Q8TAQ2 1214 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 DDX11Q96FC9 970 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 CAPNS2Q96L46 248 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.46□□□□□ -1.22
SPG11-221ENST00000560299 RNF26Q9BY78 433 aaPredicted RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 AS3MTQ9HBK9 375 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 GOPCQ9HD26 462 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 PICK1Q9NRD5 415 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 WBP1LQ9NX94 342 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 ZBTB21Q9ULJ3 1066 aa7.46□□□□□ -1.22
SPG11-221ENST00000560299 ABT1Q9ULW3 272 aaKnown RBP7.46□□□□□ -1.22
SPG11-221ENST00000560299 SIPA1L1O43166 1804 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 MYH4Q9Y623 1939 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 MANSC4A6NHS7 340 aaPredicted RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 USP17L5A8MUK1 530 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 PHF20L1A8MW92 1017 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 CXCL11O14625 94 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 DEXIO95424 95 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 FMNL1O95466 1100 aaPredicted RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 SYT1P21579 422 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 CDC27P30260 824 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 DDIT3P35638 169 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 SLC1A4P43007 532 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 SREBF2Q12772 1141 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 GRM4Q14833 912 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 SPRYD7Q5W111 196 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 ERO1BQ86YB8 467 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 SCYL3Q8IZE3 742 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 DCAF4Q8WV16 495 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 C8orf76Q96K31 380 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 WRNIP1Q96S55 665 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 TMEM121BQ9BXQ6 578 aaPredicted RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 SLC26A6Q9BXS9 759 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 ISY1Q9ULR0 285 aaKnown RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 SCAF8Q9UPN6 1271 aaKnown RBP7.45□□□□□ -1.22
SPG11-221ENST00000560299 KCNH4Q9UQ05 1017 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 MTMR7Q9Y216 660 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 SLC45A1Q9Y2W3 748 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 CSADQ9Y600 493 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 STK36Q9NRP7 1315 aa7.45□□□□□ -1.22
SPG11-221ENST00000560299 VPS37CA5D8V6 355 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 PALM3A6NDB9 673 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 KLRF2D3W0D1 207 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 PRPF3O43395 683 aaKnown RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 JAK2O60674 1132 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 CTDNEP1O95476 244 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 ZSCAN22P10073 491 aaPredicted RBP7.44□□□□□ -1.22
SPG11-221ENST00000560299 PDHBP11177 359 aa7.44□□□□□ -1.22
SPG11-221ENST00000560299 ZNF157P51786 506 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms