RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 JAZF1Q86VZ6 243 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 VPS37DQ86XT2 251 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 DDX54Q8TDD1 881 aaKnown RBP2.5□□□□□ -2.01
USP3-209ENST00000558925 NKD1Q969G9 470 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 DACT3Q96B18 629 aaPredicted RBP2.5□□□□□ -2.01
USP3-209ENST00000558925 ANAPC16Q96DE5 110 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 FOXQ1Q9C009 403 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 ADAMTS10Q9H324 1103 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 ZSWIM4Q9H7M6 989 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 EPB41L4AQ9HCS5 686 aaPredicted RBP2.5□□□□□ -2.01
USP3-209ENST00000558925 PRDM5Q9NQX1 630 aaPredicted RBP2.5□□□□□ -2.01
USP3-209ENST00000558925 MAPK8IP1Q9UQF2 711 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 CAPN6Q9Y6Q1 641 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 TEX51A0A1B0GUA7 166 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SLC22A31A6NKX4 558 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SMAD7O15105 426 aaKnown RBP2.49□□□□□ -2.01
USP3-209ENST00000558925 GRIN3BO60391 1043 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SEMA7AO75326 666 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 RLBP1P12271 317 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 TNFRSF1AP19438 455 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 NME2P22392 152 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ARNTP27540 789 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 MCM4P33991 863 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 CLCQ05315 142 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 RING1Q06587 406 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ZNF252P-AS1Q0IIN9 211 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SERINC3Q13530 473 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ZNF385BQ569K4 471 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 MAP1SQ66K74 1059 aaPredicted RBP2.49□□□□□ -2.01
USP3-209ENST00000558925 LLGL2Q6P1M3 1020 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 HHIPL2Q6UWX4 724 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 GK5Q6ZS86 529 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ANKS3Q6ZW76 656 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ARMCX6Q7L4S7 300 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 REC114Q7Z4M0 266 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SLITRK4Q8IW52 837 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 NLGN1Q8N2Q7 840 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 RIN3Q8TB24 985 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 KCNB2Q92953 911 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 UBE2FQ969M7 185 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ARMC5Q96C12 935 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 BORCS6Q96GS4 357 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SHDQ96IW2 340 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SEC16BQ96JE7 1060 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SPATA32Q96LK8 384 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 SRRTQ9BXP5 876 aaKnown RBP2.49□□□□□ -2.01
USP3-209ENST00000558925 MIR1-1HGQ9H1L0 117 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 OSBPL2Q9H1P3 480 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 ANTXR1Q9H6X2 564 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 BRMS1Q9HCU9 246 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 TMEM59LQ9UK28 342 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 POLR3KQ9Y2Y1 108 aaPredicted RBP2.49□□□□□ -2.01
USP3-209ENST00000558925 CSADQ9Y600 493 aa2.49□□□□□ -2.01
USP3-209ENST00000558925 FAM221BA6H8Z2 402 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CCDC85CA6NKD9 419 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 FAM155AB1AL88 458 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 KLF4O43474 513 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 PRICKLE3O43900 615 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 PEX10O60683 326 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CILPO75339 1184 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 SASH1O94885 1247 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 EFEMP2O95967 443 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 RAC2P15153 192 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 LMNB1P20700 586 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 GALK1P51570 392 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 RPS26P62854 115 aaKnown RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 PPP2R3AQ06190 1150 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 MPP2Q14168 576 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 INPP5AQ14642 412 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 SPATS1Q496A3 300 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 FBXW10Q5XX13 1052 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 RUFY4Q6ZNE9 571 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 ZNF662Q6ZS27 426 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 C22orf34Q6ZV56 151 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 LSRQ86X29 649 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 IRF2BP1Q8IU81 584 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CKAP2LQ8IYA6 745 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 MFSD4AQ8N468 514 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CELF2-AS1Q8N7Q2 184 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 GPBAR1Q8TDU6 330 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 MICAL1Q8TDZ2 1067 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CPLX3Q8WVH0 158 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 GATAD2BQ8WXI9 593 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 FERD3LQ96RJ6 166 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 BDH2Q9BUT1 245 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 HIRIP3Q9BW71 556 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 LRRC3Q9BY71 257 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 ZNF552Q9H707 407 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 CACNA2D2Q9NY47 1150 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CDK11AQ9UQ88 783 aaPredicted RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 TBX22Q9Y458 520 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 CORINQ9Y5Q5 1042 aa2.48□□□□□ -2.01
USP3-209ENST00000558925 MRPL42Q9Y6G3 142 aaKnown RBP2.48□□□□□ -2.01
USP3-209ENST00000558925 DCDC2CA8MYV0 355 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 B2RBV5 119 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 DNAJA2O60884 412 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 AFF3P51826 1226 aaKnown RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 EPHB3P54753 998 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 EIF6P56537 245 aaKnown RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 ZXDAP98168 799 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms