RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GSDMAQ96QA5 445 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 RBM28Q9NW13 759 aaKnown RBP14.61□□□□□ -0.07
LDLR-207ENST00000558013 PUF60Q9UHX1 559 aaKnown RBP14.61□□□□□ -0.07
LDLR-207ENST00000558013 ZNF652Q9Y2D9 606 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 PHLPP1O60346 1717 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 ERICH4A6NGS2 130 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 EFCAB8A8MWE9 144 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 HIBADHP31937 336 aaKnown RBP14.61□□□□□ -0.07
LDLR-207ENST00000558013 BRMS1Q9HCU9 246 aa14.61□□□□□ -0.07
LDLR-207ENST00000558013 POLR3GO15318 223 aaPredicted RBP14.6□□□□□ -0.07
LDLR-207ENST00000558013 TFAP4Q01664 338 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 BMS1Q14692 1282 aaKnown RBP14.6□□□□□ -0.07
LDLR-207ENST00000558013 PPP2R5BQ15173 497 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 DIXDC1Q155Q3 683 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 TUBB4AP04350 444 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 CCDC175P0C221 793 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 GOLGA8HP0CJ92 632 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 GABPB1Q06547 395 aaPredicted RBP14.6□□□□□ -0.07
LDLR-207ENST00000558013 TMCO3Q6UWJ1 677 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 CCDC34Q96HJ3 373 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 TFR2Q9UP52 801 aa14.6□□□□□ -0.07
LDLR-207ENST00000558013 COL16A1Q07092 1604 aaPredicted RBP14.59□□□□□ -0.07
LDLR-207ENST00000558013 N4BP3O15049 544 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 MFAP3LO75121 409 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 DDAH1O94760 285 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 PMS1P54277 932 aaKnown RBP14.59□□□□□ -0.07
LDLR-207ENST00000558013 ERVK-24P63145 666 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 PFKFB3Q16875 520 aaPredicted RBP14.59□□□□□ -0.07
LDLR-207ENST00000558013 IQUBQ8NA54 791 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 LRRC15Q8TF66 581 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 PARD6BQ9BYG5 372 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 TMEM60Q9H2L4 133 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 PANX2Q96RD6 677 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 CRNKL1Q9BZJ0 848 aaKnown RBP14.59□□□□□ -0.07
LDLR-207ENST00000558013 PRCPP42785 496 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 FAM98CQ17RN3 349 aaKnown RBP14.59□□□□□ -0.07
LDLR-207ENST00000558013 ZNF569Q5MCW4 686 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 C4orf32Q8N8J7 132 aa14.59□□□□□ -0.07
LDLR-207ENST00000558013 COL14A1Q05707 1796 aaKnown RBP14.58□□□□□ -0.07
LDLR-207ENST00000558013 ORC4O43929 436 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 CALM1P0DP23 149 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 CALM2P0DP24 149 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 CALM3P0DP25 149 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 CLEC4GQ6UXB4 293 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 NELFBQ8WX92 580 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 KIF20AO95235 890 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 TBC1D8O95759 1140 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 RSRC2Q7L4I2 434 aaKnown RBP14.58□□□□□ -0.08
LDLR-207ENST00000558013 NBPF5PQ86XG9 351 aaPredicted RBP14.58□□□□□ -0.08
LDLR-207ENST00000558013 CHP1Q99653 195 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 SRRTQ9BXP5 876 aaKnown RBP14.58□□□□□ -0.08
LDLR-207ENST00000558013 TRIM10Q9UDY6 481 aa14.58□□□□□ -0.08
LDLR-207ENST00000558013 CYTH3O43739 400 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 INF2Q27J81 1249 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 NAALADL2Q58DX5 795 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 PNMA1Q8ND90 353 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 SH3RF3Q8TEJ3 882 aaPredicted RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 SAP30BPQ9UHR5 308 aaKnown RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 GYS2P54840 703 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 CC2D1AQ6P1N0 951 aaPredicted RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 IRF2BP1Q8IU81 584 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 BLIDQ8IZY5 108 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 PES1O00541 588 aaKnown RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 NKRFO15226 690 aaKnown RBP eCLIP14.57□□□□□ -0.08
LDLR-207ENST00000558013 RPN1P04843 607 aaKnown RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 DZIP1Q86YF9 867 aaKnown RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 NLRP3Q96P20 1036 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 NUP88Q99567 741 aaPredicted RBP14.57□□□□□ -0.08
LDLR-207ENST00000558013 SLF1Q9BQI6 1058 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 KAT14Q9H8E8 782 aa14.57□□□□□ -0.08
LDLR-207ENST00000558013 KCNJ18B7U540 433 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 COPB1P53618 953 aaKnown RBP14.56□□□□□ -0.08
LDLR-207ENST00000558013 PAK1Q13153 545 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 KCNJ12Q14500 433 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 SLC35F6Q8N357 371 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 NOL10Q9BSC4 688 aaKnown RBP14.56□□□□□ -0.08
LDLR-207ENST00000558013 STX8Q9UNK0 236 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 GOLGA6L9A6NEM1 432 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 FILIP1LQ4L180 1135 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 TCP11X2Q5H9J9 407 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 HEATR3Q7Z4Q2 680 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 RASSF8Q8NHQ8 419 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 SETDB2Q96T68 719 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 ATP8A2Q9NTI2 1148 aa14.56□□□□□ -0.08
LDLR-207ENST00000558013 BMP15O95972 392 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 STAT6P42226 847 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 NFIXQ14938 502 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 WWC2Q6AWC2 1192 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 SUGCTQ9HAC7 445 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 ABHD10Q9NUJ1 306 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 ARGLU1Q9NWB6 273 aaPredicted RBP14.55□□□□□ -0.08
LDLR-207ENST00000558013 SPATA31A5Q5VU36 1347 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 SPATA31A7Q8IWB4 1347 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 GTPBP6O43824 516 aaPredicted RBP14.55□□□□□ -0.08
LDLR-207ENST00000558013 USP5P45974 858 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 UBXN1Q04323 297 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 TGFBRAP1Q8WUH2 860 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 MAD2L2Q9UI95 211 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 TM4SF1P30408 202 aa14.55□□□□□ -0.08
LDLR-207ENST00000558013 KRT9P35527 623 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms