RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ZNF417Q8TAU3 575 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 BAHD1Q8TBE0 780 aaPredicted RBP4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF512BQ96KM6 892 aaPredicted RBP4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF587Q96SQ5 575 aaPredicted RBP4.27□□□□□ -1.73
TRAV28-201ENST00000557548 APBA2Q99767 749 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 RAD18Q9NS91 495 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 PPP1R9AQ9ULJ8 1098 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 MAPRE3Q9UPY8 281 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ALG1L2C9J202 215 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 FANCGO15287 622 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 PRODHO43272 600 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 TBX1O43435 398 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 CBFA2T2O43439 604 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 CLEC3AO75596 197 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 PABPC1P11940 636 aaKnown RBP4.26□□□□□ -1.73
TRAV28-201ENST00000557548 PMLP29590 882 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 GBP1P32455 592 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 NTF4P34130 210 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 GRIA2P42262 883 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 TBX4P57082 545 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 SUMO1P63165 101 aaKnown RBP4.26□□□□□ -1.73
TRAV28-201ENST00000557548 SLC6A19Q695T7 634 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 WWC2Q6AWC2 1192 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 UBE3DQ7Z6J8 389 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 STRA8Q7Z7C7 330 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 LRRTM3Q86VH5 581 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 HID1Q8IV36 788 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 SCUBE1Q8IWY4 988 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 CCDC144CPQ8IYA2 1237 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 AFAP1L2Q8N4X5 818 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF507Q8TCN5 953 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 UBASH3BQ8TF42 649 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 CCDC74BQ96LY2 380 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 MRPL4Q9BYD3 311 aaKnown RBP4.26□□□□□ -1.73
TRAV28-201ENST00000557548 KLHL25Q9H0H3 589 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 KCNK4Q9NYG8 393 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 SFMBT1Q9UHJ3 866 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 TCEAL9Q9UHQ7 104 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 AP4E1Q9UPM8 1137 aa4.26□□□□□ -1.73
TRAV28-201ENST00000557548 SPDYE3A6NKU9 549 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 PEX14O75381 377 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 ALDH1L1O75891 902 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 DNAJC8O75937 253 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 NEFMP07197 916 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 FGFR1P11362 822 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CD68P34810 354 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 GUCY2FP51841 1108 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 KRTAP1-1Q07627 177 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 PRAMEF13Q5VWM6 474 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 NSMFQ6X4W1 530 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CDC37L1Q7L3B6 337 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 ADAT2Q7Z6V5 191 aaKnown RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 DMRTC2Q8IXT2 367 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CCDC146Q8IYE0 955 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF513Q8N8E2 541 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 RNF214Q8ND24 703 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 XAGE3Q8WTP9 111 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CYB5D2Q8WUJ1 264 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 LEO1Q8WVC0 666 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 SMARCC1Q92922 1105 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 TSR2Q969E8 191 aaKnown RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 OSBP2Q969R2 916 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CCDC136Q96JN2 1154 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 FANCD2OSQ96PS1 177 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 MKRN2Q9H000 416 aaKnown RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 DISC1Q9NRI5 854 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 CRIM1Q9NZV1 1036 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 MAGEC2Q9UBF1 373 aaPredicted RBP4.25□□□□□ -1.73
TRAV28-201ENST00000557548 NDOR1Q9UHB4 597 aa4.25□□□□□ -1.73
TRAV28-201ENST00000557548 SYNGAP1Q96PV0 1343 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 WASHC2CQ9Y4E1 1318 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 DNAJC25-GNG10A0A024R161 153 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 DEAF1O75398 565 aaPredicted RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 KATNA1O75449 491 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 C8AP07357 584 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 STRN3Q13033 797 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 MAP7Q14244 749 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 SLBPQ14493 270 aaKnown RBP eCLIP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 TTLL4Q14679 1199 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 TTF1Q15361 905 aaPredicted RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 EXOSC6Q5RKV6 272 aaKnown RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 CHSY3Q70JA7 882 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 BRAPQ7Z569 592 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 MAP4K3Q8IVH8 894 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 WDR75Q8IWA0 830 aaKnown RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 PPM1KQ8N3J5 372 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 ADCY4Q8NFM4 1077 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 RIN3Q8TB24 985 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 DDX1Q92499 740 aaKnown RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 PSMD1Q99460 953 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 GBP3Q9H0R5 595 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 TRIM39Q9HCM9 518 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 INTS7Q9NVH2 962 aaKnown RBP4.24□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF451Q9Y4E5 1061 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 RIPOR2Q9Y4F9 1068 aa4.24□□□□□ -1.73
TRAV28-201ENST00000557548 BLACEA4D250 179 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 FAM83GA6ND36 823 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 DLL1O00548 723 aa4.23□□□□□ -1.73
TRAV28-201ENST00000557548 NOP56O00567 594 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms