RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CPLX3Q8WVH0 158 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 RPGRIP1Q96KN7 1286 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 TNKSO95271 1327 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 DDAH1O94760 285 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 ATP2B1P20020 1258 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 LMAN1P49257 510 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 FXR1P51114 621 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHMT2-232ENST00000557487 COPB1P53618 953 aaKnown RBP18.39■□□□□ 0.53
SHMT2-232ENST00000557487 STX17P56962 302 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 FUT2Q10981 343 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 PAK1Q13153 545 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 TTC38Q5R3I4 469 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 DEFB132Q7Z7B7 95 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 ZKSCAN3Q9BRR0 538 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 PDE11AQ9HCR9 933 aa18.39■□□□□ 0.53
SHMT2-232ENST00000557487 MYH6P13533 1939 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 APBA3O96018 575 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 CAPN2P17655 700 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 EHBP1Q8NDI1 1231 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 CCDC148Q8NFR7 591 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 TNFRSF25Q93038 417 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 PNKPQ96T60 521 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 HAUS4Q9H6D7 363 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 ABCB6Q9NP58 842 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 MYO6Q9UM54 1294 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 CTNND2Q9UQB3 1225 aa18.38■□□□□ 0.53
SHMT2-232ENST00000557487 PRKAB2O43741 272 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ARHGAP25P42331 645 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 AMPD2Q01433 879 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 E2F4Q16254 413 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 MAP9Q49MG5 647 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ZNF658Q5TYW1 1059 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ZNF34Q8IZ26 560 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 CTCFLQ8NI51 663 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 PIGBQ92521 554 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ZSWIM4Q9H7M6 989 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 FEZ2Q9UHY8 353 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 EP400Q96L91 3159 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 A0A1W2PQC6 194 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 H7C1D1 291 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 PLSCR1O15162 318 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ERVK-24P63145 666 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 MCM6Q14566 821 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 TCP11X2Q5H9J9 407 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ARL6IP4Q66PJ3 421 aaKnown RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 CCDC82Q8N4S0 544 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 CAMKK2Q96RR4 588 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ZSCAN10Q96SZ4 725 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 NUP88Q99567 741 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 MKRN1Q9UHC7 482 aaKnown RBP18.37■□□□□ 0.53
SHMT2-232ENST00000557487 ASAP1Q9ULH1 1129 aa18.37■□□□□ 0.53
SHMT2-232ENST00000557487 NHSQ6T4R5 1651 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 PSMD14O00487 310 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 CYP19A1P11511 503 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-232ENST00000557487 CASP8Q14790 479 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 RRAGBQ5VZM2 374 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 PTF1AQ7RTS3 328 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 VPS18Q9P253 973 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 XDHP47989 1333 aa18.36■□□□□ 0.53
SHMT2-232ENST00000557487 KCNJ18B7U540 433 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 KCNQ2O43526 872 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 MYL1P05976 194 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 FGRP09769 529 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 GTF2E1P29083 439 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 IL6STP40189 918 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 KCNJ12Q14500 433 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 PDXDC2PQ6P474 469 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 IQCA1Q86XH1 822 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 ACRBPQ8NEB7 543 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 BBXQ8WY36 941 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 LRP2BPQ9P2M1 347 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 TARSL2A2RTX5 802 aaKnown RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 KRT9P35527 623 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 EN1Q05925 392 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 CKAP4Q07065 602 aaKnown RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 IFIT1BQ5T764 474 aaKnown RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 CMTR1Q8N1G2 835 aaKnown RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 CDC5LQ99459 802 aaKnown RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 RASSF4Q9H2L5 321 aa18.35■□□□□ 0.53
SHMT2-232ENST00000557487 EPN1Q9Y6I3 576 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-232ENST00000557487 LONP1P36776 959 aaKnown RBP18.34■□□□□ 0.53
SHMT2-232ENST00000557487 VSNL1P62760 191 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 PTGDRQ13258 359 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 TSR1Q2NL82 804 aaKnown RBP18.34■□□□□ 0.53
SHMT2-232ENST00000557487 TMTC3Q6ZXV5 915 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 TRAPPC11Q7Z392 1133 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 ENAHQ8N8S7 591 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-232ENST00000557487 OR8K1Q8NGG5 319 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 NOC3LQ8WTT2 800 aaKnown RBP18.34■□□□□ 0.53
SHMT2-232ENST00000557487 NELFBQ8WX92 580 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 BRIP1Q9BX63 1249 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 NUP98P52948 1817 aa18.34■□□□□ 0.53
SHMT2-232ENST00000557487 MAGEB6P1A0A0J9YX57 407 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 NDUFA10O95299 355 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 CYP7A1P22680 504 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 EEF1GP26641 437 aaKnown RBP18.33■□□□□ 0.53
SHMT2-232ENST00000557487 CCT6AP40227 531 aaKnown RBP18.33■□□□□ 0.53
SHMT2-232ENST00000557487 AARSP49588 968 aaKnown RBP eCLIP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms