RNA–Protein interactions for RNA: ENST00000557431.5

SLIRP-210, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-210ENST00000557431 SEPT4O43236 478 aa16.99■□□□□ 0.31
SLIRP-210ENST00000557431 SMARCA5O60264 1052 aaPredicted RBP16.99■□□□□ 0.31
SLIRP-210ENST00000557431 EEF2P13639 858 aaKnown RBP16.99■□□□□ 0.31
SLIRP-210ENST00000557431 TAL1P17542 331 aaPredicted RBP16.99■□□□□ 0.31
SLIRP-210ENST00000557431 LRRC41Q15345 812 aa16.99■□□□□ 0.31
SLIRP-210ENST00000557431 C12orf60Q5U649 245 aa16.99■□□□□ 0.31
SLIRP-210ENST00000557431 BADQ92934 168 aa16.99■□□□□ 0.31
SLIRP-210ENST00000557431 POTEB2H3BUK9 544 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 STRNO43815 780 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 FAM83BQ5T0W9 1011 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 TMED8Q6PL24 325 aaPredicted RBP16.98■□□□□ 0.31
SLIRP-210ENST00000557431 ARRDC4Q8NCT1 418 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 NUP88Q99567 741 aaPredicted RBP16.98■□□□□ 0.31
SLIRP-210ENST00000557431 PDLIM7Q9NR12 457 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 SLC4A4Q9Y6R1 1079 aa16.98■□□□□ 0.31
SLIRP-210ENST00000557431 CUL9Q8IWT3 2517 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 TRIM43BA6NCK2 446 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 WDR46O15213 610 aaKnown RBP16.97■□□□□ 0.31
SLIRP-210ENST00000557431 C16orf86Q6ZW13 317 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 MB21D1Q8N884 522 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 TRIM43Q96BQ3 446 aaPredicted RBP16.97■□□□□ 0.31
SLIRP-210ENST00000557431 MMP19Q99542 508 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 PUS7LQ9H0K6 701 aaKnown RBP16.97■□□□□ 0.31
SLIRP-210ENST00000557431 MROH8Q9H579 483 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 ZBTB40Q9NUA8 1239 aa16.97■□□□□ 0.31
SLIRP-210ENST00000557431 ZBED9Q6R2W3 1325 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 LAMA2P24043 3122 aaKnown RBP16.96■□□□□ 0.31
SLIRP-210ENST00000557431 PGK1P00558 417 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 FCER1AP12319 257 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 ITGB8P26012 769 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 CTR9Q6PD62 1173 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 RPAP2Q8IXW5 612 aaPredicted RBP16.96■□□□□ 0.31
SLIRP-210ENST00000557431 HAUS7Q99871 368 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 ATP8A2Q9NTI2 1148 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 UNC80Q8N2C7 3258 aa16.96■□□□□ 0.31
SLIRP-210ENST00000557431 LCTP09848 1927 aa16.96■□□□□ 0.3
SLIRP-210ENST00000557431 HMMRO75330 724 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 ATP5JP18859 108 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 SLC4A3P48751 1232 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 IRX5P78411 483 aaPredicted RBP16.95■□□□□ 0.3
SLIRP-210ENST00000557431 TLE2Q04725 743 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 SNX17Q15036 470 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 ZNF697Q5TEC3 545 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.95■□□□□ 0.32e-6■□□□□ 10.5
SLIRP-210ENST00000557431 COL25A1Q9BXS0 654 aaPredicted RBP16.95■□□□□ 0.3
SLIRP-210ENST00000557431 SH2D4AQ9H788 454 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 XPNPEP3Q9NQH7 507 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
SLIRP-210ENST00000557431 LRRC37A2A6NM11 1700 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 RAB11FIP3O75154 756 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 C20orf194Q5TEA3 1177 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 TSHZ3Q63HK5 1081 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 RIOX2Q8IUF8 465 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 REPS2Q8NFH8 660 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 CCDC17Q96LX7 622 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.94■□□□□ 0.3
SLIRP-210ENST00000557431 SLC5A4Q9NY91 659 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 ZNF214Q9UL59 606 aaPredicted RBP16.94■□□□□ 0.3
SLIRP-210ENST00000557431 PPP1R9AQ9ULJ8 1098 aa16.94■□□□□ 0.3
SLIRP-210ENST00000557431 EYSQ5T1H1 3165 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 VWA5AO00534 786 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 STAT3P40763 770 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 EPHB4P54760 987 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 ZNF792Q3KQV3 632 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.93■□□□□ 0.3
SLIRP-210ENST00000557431 AMOTL1Q8IY63 956 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 ABRAQ8N0Z2 381 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 CDX2Q99626 313 aaPredicted RBP16.93■□□□□ 0.3
SLIRP-210ENST00000557431 TINF2Q9BSI4 451 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 ADAMTS5Q9UNA0 930 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 CDH23Q9H251 3354 aa16.93■□□□□ 0.3
SLIRP-210ENST00000557431 SLC25A27O95847 323 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 ZNF865P0CJ78 1059 aaPredicted RBP16.92■□□□□ 0.3
SLIRP-210ENST00000557431 RARBP10826 455 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 KCTD2Q14681 263 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 UBE3CQ15386 1083 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 FAM109BQ6ICB4 259 aaPredicted RBP16.92■□□□□ 0.3
SLIRP-210ENST00000557431 MYLIPQ8WY64 445 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 TTYH1Q9H313 450 aaPredicted RBP16.92■□□□□ 0.3
SLIRP-210ENST00000557431 GOPCQ9HD26 462 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 PHF24Q9UPV7 400 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 RIPK3Q9Y572 518 aa16.92■□□□□ 0.3
SLIRP-210ENST00000557431 A0A1W2PQ45 241 aaPredicted RBP16.91■□□□□ 0.3
SLIRP-210ENST00000557431 A0A1W2PQY0 241 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 MYADML2A6NDP7 307 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 MINDY4BA8MYZ0 360 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 PQBP1O60828 265 aaKnown RBP16.91■□□□□ 0.3
SLIRP-210ENST00000557431 RASA1P20936 1047 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 CHMP4CQ96CF2 233 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 KANSL2Q9H9L4 492 aa16.91■□□□□ 0.3
SLIRP-210ENST00000557431 A0A0C4DFX4 3053 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 PRDM1O75626 825 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 CLTBP09497 229 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 MS4A1P11836 297 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 SNRNP48Q6IEG0 339 aaKnown RBP16.9■□□□□ 0.3
SLIRP-210ENST00000557431 CPXCR1Q8N123 301 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 DDRGK1Q96HY6 314 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 LRRCC1Q9C099 1032 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 SEMA6BQ9H3T3 888 aa16.9■□□□□ 0.3
SLIRP-210ENST00000557431 EPB41L4AQ9HCS5 686 aaPredicted RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms