RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GMCL1Q96IK5 515 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 FBXO28Q9NVF7 368 aa15.01□□□□□ -0.01
SHMT2-227ENST00000557269 KLF18A0A0U1RQI7 1052 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 WDR46O15213 610 aaKnown RBP15□□□□□ -0.01
SHMT2-227ENST00000557269 CYP2C8P10632 490 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 BMP3P12645 472 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 HOXA7P31268 230 aaPredicted RBP15□□□□□ -0.01
SHMT2-227ENST00000557269 SLC1A4P43007 532 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 ZNF543Q08ER8 600 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 APOA5Q6Q788 366 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 CATSPERGQ6ZRH7 1159 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 CATIPQ7Z7H3 387 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 CCDC144CPQ8IYA2 1237 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 TMTC2Q8N394 836 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 STAG2Q8N3U4 1231 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 NUP133Q8WUM0 1156 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 DCAF4Q8WV16 495 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 ASCC2Q9H1I8 757 aaPredicted RBP15□□□□□ -0.01
SHMT2-227ENST00000557269 ALDH8A1Q9H2A2 487 aaPredicted RBP15□□□□□ -0.01
SHMT2-227ENST00000557269 CPVLQ9H3G5 476 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 GPCPD1Q9NPB8 672 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 HPS5Q9UPZ3 1129 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 SLC12A7Q9Y666 1083 aa15□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L15C9J2P7 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L13C9JLJ4 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L11C9JVI0 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L18D6R9N7 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L22D6RA61 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L17D6RBQ6 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L19D6RCP7 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L20D6RJB6 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 PEX10O60683 326 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 CD2BP2O95400 341 aaKnown RBP14.99□□□□□ -0.01
SHMT2-227ENST00000557269 EVCP57679 992 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 USP17L24Q0WX57 530 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 GRM4Q14833 912 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 RABEP1Q15276 862 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 CCDC96Q2M329 555 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 SLC35G1Q2M3R5 365 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 NOL8Q76FK4 1167 aaKnown RBP14.99□□□□□ -0.01
SHMT2-227ENST00000557269 P2RX7Q99572 595 aaKnown RBP14.99□□□□□ -0.01
SHMT2-227ENST00000557269 TANGO6Q9C0B7 1094 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 R3HDMLQ9H3Y0 253 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 MAD2L2Q9UI95 211 aa14.99□□□□□ -0.01
SHMT2-227ENST00000557269 TMEM232C9JQI7 657 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 DDAH1O94760 285 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 PDIA3P30101 505 aaKnown RBP14.98□□□□□ -0.01
SHMT2-227ENST00000557269 SLC16A2P36021 539 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 MICU3Q86XE3 530 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 FAM217BQ9NTX9 383 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-227ENST00000557269 RNF186Q9NXI6 227 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 TPCN1Q9ULQ1 816 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 ISY1Q9ULR0 285 aaKnown RBP14.98□□□□□ -0.01
SHMT2-227ENST00000557269 NAP1L2Q9ULW6 460 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-227ENST00000557269 SLC45A1Q9Y2W3 748 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 RLFQ13129 1914 aa14.98□□□□□ -0.01
SHMT2-227ENST00000557269 PALM3A6NDB9 673 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-227ENST00000557269 GOLGA8BA8MQT2 603 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 ZBTB43O43298 467 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 FLOT1O75955 427 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 LARGE1O95461 756 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 PARP1P09874 1014 aaKnown RBP14.97□□□□□ -0.01
SHMT2-227ENST00000557269 SAMD1Q6SPF0 538 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-227ENST00000557269 NBPF11Q86T75 865 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 REM2Q8IYK8 340 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-227ENST00000557269 CMTR1Q8N1G2 835 aaKnown RBP14.97□□□□□ -0.01
SHMT2-227ENST00000557269 UBA5Q9GZZ9 404 aa14.97□□□□□ -0.01
SHMT2-227ENST00000557269 SPDYE16A6NNV3 312 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-227ENST00000557269 OSBPP22059 807 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 CDC27P30260 824 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 DSG3P32926 999 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 SNAP25P60880 206 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 IRX3P78415 501 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-227ENST00000557269 CRHR2Q13324 411 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 COG2Q14746 738 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 TAF1CQ15572 869 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-227ENST00000557269 ASPRV1Q53RT3 343 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 FANCBQ8NB91 859 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 KIFC2Q96AC6 838 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 ATG4CQ96DT6 458 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 ZCCHC17Q9NP64 241 aaKnown RBP14.96□□□□□ -0.01
SHMT2-227ENST00000557269 FEM1BQ9UK73 627 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 PPP1R9AQ9ULJ8 1098 aa14.96□□□□□ -0.01
SHMT2-227ENST00000557269 ADGRA2Q96PE1 1338 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 PARP14Q460N5 1801 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 GOLGA8AA7E2F4 631 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 KLRF2D3W0D1 207 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 TRPA1O75762 1119 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 PLEKHA8P1O95397 391 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 TBC1D8O95759 1140 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 HERVK_113P62684 666 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 CCT2P78371 535 aaKnown RBP14.95□□□□□ -0.02
SHMT2-227ENST00000557269 STK3Q13188 491 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 PABPC4Q13310 644 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-227ENST00000557269 ME3Q16798 604 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 GPATCH4Q5T3I0 446 aaKnown RBP14.95□□□□□ -0.02
SHMT2-227ENST00000557269 OTUD7BQ6GQQ9 843 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 BTNL9Q6UXG8 535 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 SYNE3Q6ZMZ3 975 aa14.95□□□□□ -0.02
SHMT2-227ENST00000557269 ZNF274Q96GC6 653 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms