RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 SH3D19Q5HYK7 790 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 SPRYD7Q5W111 196 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 FASTKD5Q7L8L6 764 aaKnown RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 MICU3Q86XE3 530 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 C12orf42Q96LP6 360 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 SLKQ9H2G2 1235 aaPredicted RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 TSHZ2Q9NRE2 1034 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 SH2B1Q9NRF2 756 aaPredicted RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 RBM28Q9NW13 759 aaKnown RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 TPCN1Q9ULQ1 816 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 KCNH4Q9UQ05 1017 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 A0A0G2JLL6 359 aaPredicted RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 GOLGA8AA7E2F4 631 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 WDR46O15213 610 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 DHX16O60231 1041 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PARP1P09874 1014 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 SNHG28P0DPA3 235 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PDHBP11177 359 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 BMP3P12645 472 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 SLC1A4P43007 532 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 GTF2A2P52657 109 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 HMGCS2P54868 508 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 STK3Q13188 491 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 GRM4Q14833 912 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 DEFB115Q30KQ5 88 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 ASPRV1Q53RT3 343 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 GPATCH4Q5T3I0 446 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 CPLX2Q6PUV4 134 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PAXIP1Q6ZW49 1069 aaPredicted RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PRRT2Q7Z6L0 340 aaPredicted RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 RASAL3Q86YV0 1011 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 FANCBQ8NB91 859 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PROCA1Q8NCQ7 364 aaPredicted RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 GMCL1Q96IK5 515 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 LARP6Q9BRS8 491 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 MYL10Q9BUA6 226 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 ISY1Q9ULR0 285 aaKnown RBP11.34□□□□□ -0.59
TMEM260-213ENST00000556929 PARP14Q460N5 1801 aa11.34□□□□□ -0.59
TMEM260-213ENST00000556929 NID2Q14112 1375 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 K7ELQ4 463 aaPredicted RBP11.33□□□□□ -0.6
TMEM260-213ENST00000556929 PFKFB2O60825 505 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CD2BP2O95400 341 aaKnown RBP11.33□□□□□ -0.6
TMEM260-213ENST00000556929 NDUFB10O96000 172 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 SLC10A3P09131 477 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CETPP11597 493 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 RXRAP19793 462 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 GNAQP50148 359 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CLCN6P51797 869 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CCT2P78371 535 aaKnown RBP11.33□□□□□ -0.6
TMEM260-213ENST00000556929 PABPC4Q13310 644 aaKnown RBP eCLIP11.33□□□□□ -0.6
TMEM260-213ENST00000556929 ME3Q16798 604 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 RTN1Q16799 776 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CCDC96Q2M329 555 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 GADL1Q6ZQY3 521 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 RAB11FIP4Q86YS3 637 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 CCDC144CPQ8IYA2 1237 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 LZTS2Q9BRK4 669 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 EMILIN3Q9NT22 766 aa11.33□□□□□ -0.6
TMEM260-213ENST00000556929 PALM3A6NDB9 673 aaPredicted RBP11.32□□□□□ -0.6
TMEM260-213ENST00000556929 MANSC4A6NHS7 340 aaPredicted RBP11.32□□□□□ -0.6
TMEM260-213ENST00000556929 RASSF10A6NK89 507 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 CPLX1O14810 134 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 VCAM1P19320 739 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 GJA5P36382 358 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 INHBEP58166 350 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 ZNF543Q08ER8 600 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 MKRN3Q13064 507 aaKnown RBP11.32□□□□□ -0.6
TMEM260-213ENST00000556929 KCTD1Q719H9 257 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 SPICE1Q8N0Z3 855 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 CHURC1Q8WUH1 139 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 GTF3C6Q969F1 213 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 TMX3Q96JJ7 454 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 GPCPD1Q9NPB8 672 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 MAD2L2Q9UI95 211 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 FEM1BQ9UK73 627 aa11.32□□□□□ -0.6
TMEM260-213ENST00000556929 RBM19Q9Y4C8 960 aaKnown RBP11.32□□□□□ -0.6
TMEM260-213ENST00000556929 FRMPD2Q68DX3 1309 aaPredicted RBP11.32□□□□□ -0.6
TMEM260-213ENST00000556929 CCL15-CCL14A0A0B4J2E2 113 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L15C9J2P7 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L13C9JLJ4 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 TMEM232C9JQI7 657 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L11C9JVI0 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 KLRF2D3W0D1 207 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L18D6R9N7 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L22D6RA61 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L17D6RBQ6 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L19D6RCP7 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L20D6RJB6 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 PLA2G6O60733 806 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 CDKL5O76039 1030 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 LARGE1O95461 756 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 GOLGA8HP0CJ92 632 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 OSBPP22059 807 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 SMARCA1P28370 1054 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 STAT2P52630 851 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 USP17L24Q0WX57 530 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 SCRN1Q12765 414 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 SREBF2Q12772 1141 aa11.31□□□□□ -0.6
TMEM260-213ENST00000556929 IKQ13123 557 aaPredicted RBP11.31□□□□□ -0.6
TMEM260-213ENST00000556929 DGKZQ13574 1117 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms