RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MRPL44Q9H9J2 332 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 POLD4Q9HCU8 107 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 STX10O60499 249 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CALML3P27482 149 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC40Q4G0X9 1142 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 TBC1D9BQ66K14 1250 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CTR9Q6PD62 1173 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 OVOS2A0A0G2JMS6 1433 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 MST1RQ04912 1400 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CDHR2Q9BYE9 1310 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 B4DLN1 442 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 BMP15O95972 392 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 PNMA6AP0CW24 399 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 NCAPH2Q6IBW4 605 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 RGS22Q8NE09 1264 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 FERMT2Q96AC1 680 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 PARD6BQ9BYG5 372 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 TUBE1Q9UJT0 475 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 ERVV-1B6SEH8 477 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 KLRF2D3W0D1 207 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 WNT7AO00755 349 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 RPN1P04843 607 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CD44P16070 742 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 SMC1AQ14683 1233 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 KRT31Q15323 416 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 ZNF34Q8IZ26 560 aa13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 NOC4LQ9BVI4 516 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-211ENST00000556726 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 CLEC10AQ8IUN9 316 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 NELFCDQ8IXH7 590 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 CRACR2AQ9BSW2 395 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 NLRC4Q9NPP4 1024 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 SEPT11Q9NVA2 429 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 RMND1Q9NWS8 449 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TRIM10Q9UDY6 481 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TACC3Q9Y6A5 838 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 SRGAP2O75044 1071 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 EIF3JO75822 258 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 COPB1P53618 953 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 LRRC41Q15345 812 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC42Q96M95 316 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 PLA2G12BQ9BX93 195 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TCRBV5S4A2TA0A5A2 114 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 SMCO2A6NFE2 343 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 FXR1P51114 621 aaKnown RBP eCLIP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TCP10Q12799 353 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TXNRD3Q86VQ6 643 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 TC2NQ8N9U0 490 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 NAPGQ99747 312 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 DCP1AQ9NPI6 582 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 ZNF804BA4D1E1 1349 aa13.65□□□□□ -0.22
CCDC88C-211ENST00000556726 A0A087X0B3 334 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 ZBTB22O15209 634 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SPAG1Q07617 926 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 CACNA1FO60840 1977 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 PARP1P09874 1014 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 CAPN2P17655 700 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 TYW1BQ6NUM6 668 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 RAD9BQ6WBX8 426 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 CABP7Q86V35 215 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SH3RF3Q8TEJ3 882 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 COA7Q96BR5 231 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SUGCTQ9HAC7 445 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 ABCC12Q96J65 1359 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SCNN1DP51172 638 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 UBE4AQ14139 1066 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 TMTC3Q6ZXV5 915 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SLC51AQ86UW1 340 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 SMARCC1Q92922 1105 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 CHP1Q99653 195 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 KANSL2Q9H9L4 492 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 HDAC6Q9UBN7 1215 aa13.64□□□□□ -0.23
CCDC88C-211ENST00000556726 ANKRD65E5RJM6 399 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 NKX1-1Q15270 411 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 CNBD1Q8NA66 436 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 MARCH10Q8NA82 808 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 EYA3Q99504 573 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 ACBD3Q9H3P7 528 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 PDE11AQ9HCR9 933 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 HPSEQ9Y251 543 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 EFCAB8A8MWE9 144 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 PRCPP42785 496 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 SYCP1Q15431 976 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 VGLL2Q8N8G2 317 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 ZNF622Q969S3 477 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 RRP36Q96EU6 259 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 BPIFA3Q9BQP9 254 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 BMP2KQ9NSY1 1161 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 LDHCP07864 332 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 CXCR5P32302 372 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 TMEM266Q2M3C6 531 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 CYP26C1Q6V0L0 522 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 C6orf50Q9HD87 102 aa13.63□□□□□ -0.23
CCDC88C-211ENST00000556726 PRPF3O43395 683 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 SLC16A2P36021 539 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 ZNF76P36508 570 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 GTF2IP78347 998 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 MFSD14BQ5SR56 506 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms