RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ATRNL1Q5VV63 1379 aa16.91■□□□□ 0.3
VPS33B-205ENST00000556096 CYTH3O43739 400 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 CUTAO60888 179 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 TCP10Q12799 353 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SLC35G1Q2M3R5 365 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SH3BP5LQ7L8J4 393 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 CABP5Q9NP86 173 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 CEP131Q9UPN4 1083 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 GREB1LQ9C091 1923 aaPredicted RBP16.9■□□□□ 0.3
VPS33B-205ENST00000556096 ZC3H4Q9UPT8 1303 aaKnown RBP16.9■□□□□ 0.3
VPS33B-205ENST00000556096 FAM237AA0A1B0GTK4 181 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SPDYE2BA6NHP3 402 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 KINO60870 393 aaKnown RBP16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SPDYE6P0CI01 402 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SNHG28P0DPA3 235 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 NLRP5P59047 1200 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 TATDN1Q6P1N9 297 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 DNAJC18Q9H819 358 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 RRAGCQ9HB90 399 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 NMRK2Q9NPI5 230 aa16.9■□□□□ 0.3
VPS33B-205ENST00000556096 SIPA1L1O43166 1804 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 A0A1B0GVL5 298 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 MARCKSP29966 332 aaPredicted RBP16.89■□□□□ 0.29
VPS33B-205ENST00000556096 ASPRV1Q53RT3 343 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 GALNT17Q6IS24 598 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 ZSCAN29Q8IWY8 852 aaPredicted RBP16.89■□□□□ 0.29
VPS33B-205ENST00000556096 OGFOD1Q8N543 542 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 MTMR14Q8NCE2 650 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 CLIP2Q9UDT6 1046 aa16.89■□□□□ 0.29
VPS33B-205ENST00000556096 NOL7Q9UMY1 257 aaKnown RBP16.89■□□□□ 0.29
VPS33B-205ENST00000556096 PDHBP11177 359 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 VEGFAP15692 232 aaPredicted RBP16.88■□□□□ 0.29
VPS33B-205ENST00000556096 EPS15P42566 896 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 NDUFA8P51970 172 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 CCDC173Q0VFZ6 552 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 DLGAP5Q15398 846 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 USP17L2Q6R6M4 530 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 KRI1Q8N9T8 703 aaKnown RBP16.88■□□□□ 0.29
VPS33B-205ENST00000556096 CCDC148Q8NFR7 591 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 PPP1R9BQ96SB3 815 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 TMOD2Q9NZR1 351 aa16.88■□□□□ 0.29
VPS33B-205ENST00000556096 USP17L5A8MUK1 530 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 POTECB2RU33 542 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 BMP15O95972 392 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 GOLGA8HP0CJ92 632 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 TRAPPC10P48553 1259 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 MMP14P50281 582 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 TYRO3Q06418 890 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 CERKLQ49MI3 558 aaPredicted RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RBM26Q5T8P6 1007 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 CKAP2LQ8IYA6 745 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 DAGLBQ8NCG7 672 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RNF214Q8ND24 703 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 PIBF1Q8WXW3 757 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 TRIM34Q9BYJ4 488 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RIOX1Q9H6W3 641 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 BARHL2Q9NY43 387 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 MTMR7Q9Y216 660 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 HPSEQ9Y251 543 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 PCDHB6Q9Y5E3 794 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 TRIM75PA6NK02 468 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 PFKFB1P16118 471 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 PTPREP23469 700 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RPS12P25398 132 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 EARS2Q5JPH6 523 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 FKBP1CQ5VVH2 108 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RESP18Q5W5W9 173 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 SASS6Q6UVJ0 657 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 MICALL2Q8IY33 904 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 BLIDQ8IZY5 108 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 ZNF579Q8NAF0 562 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 MKL1Q969V6 931 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 RRP36Q96EU6 259 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 TIGD1Q96MW7 591 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 NYAP2Q9P242 653 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 CNOT7Q9UIV1 285 aaKnown RBP16.87■□□□□ 0.29
VPS33B-205ENST00000556096 PCDHA4Q9UN74 947 aa16.87■□□□□ 0.29
VPS33B-205ENST00000556096 STXBP3O00186 592 aa16.86■□□□□ 0.29
VPS33B-205ENST00000556096 MPHOSPH10O00566 681 aaKnown RBP16.86■□□□□ 0.29
VPS33B-205ENST00000556096 EGFRP00533 1210 aa16.86■□□□□ 0.29
VPS33B-205ENST00000556096 WWC2Q6AWC2 1192 aa16.86■□□□□ 0.29
VPS33B-205ENST00000556096 SHC4Q6S5L8 630 aa16.86■□□□□ 0.29
VPS33B-205ENST00000556096 KANSL2Q9H9L4 492 aa16.86■□□□□ 0.29
VPS33B-205ENST00000556096 ZNF70Q9UC06 446 aaPredicted RBP16.86■□□□□ 0.29
VPS33B-205ENST00000556096 FBXO2Q9UK22 296 aaPredicted RBP16.86■□□□□ 0.29
VPS33B-205ENST00000556096 SRPRBQ9Y5M8 271 aaKnown RBP16.86■□□□□ 0.29
VPS33B-205ENST00000556096 ZNF202O95125 648 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 SPDYE2Q495Y8 402 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 TBC1D10BQ4KMP7 808 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 SAMD7Q7Z3H4 446 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 LRRC47Q8N1G4 583 aaKnown RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 CCDC12Q8WUD4 166 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 FAM151AQ8WW52 585 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 GPKOWQ92917 476 aaPredicted RBP eCLIP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 GPBP1L1Q9HC44 474 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 GPRC5DQ9NZD1 345 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 HERC5Q9UII4 1024 aaKnown RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 MRVI1Q9Y6F6 885 aa16.85■□□□□ 0.29
VPS33B-205ENST00000556096 BAZ2BQ9UIF8 2168 aaKnown RBP16.85■□□□□ 0.29
VPS33B-205ENST00000556096 FAM205CA6NFA0 338 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms