RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 PALD1Q9ULE6 856 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 ERBB3P21860 1342 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 RNASE9P60153 205 aaKnown RBP9.12□□□□□ -0.95
SYNE2-220ENST00000555612 DYNLL1P63167 89 aaKnown RBP9.12□□□□□ -0.95
SYNE2-220ENST00000555612 KCTD1Q719H9 257 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 RPS6KC1Q96S38 1066 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 KDM3AQ9Y4C1 1321 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 FAM135BQ49AJ0 1406 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 TNNC2P02585 160 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 TNNC1P63316 161 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 RSPH3Q86UC2 560 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 CSRNP2Q9H175 543 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 TAB2Q9NYJ8 693 aa9.12□□□□□ -0.95
SYNE2-220ENST00000555612 FANCBQ8NB91 859 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CCT6BQ92526 530 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 STMN4Q9H169 189 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 ANKFY1Q9P2R3 1169 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 DDX25Q9UHL0 483 aaKnown RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 AKT3Q9Y243 479 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 PAXBP1Q9Y5B6 917 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 ATF7P17544 494 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 ZBTB16Q05516 673 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 IPO4Q8TEX9 1081 aaKnown RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 MASTLQ96GX5 879 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 TSGA10Q9BZW7 698 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CLSTN2Q9H4D0 955 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 PCDHA12Q9UN75 941 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 USP17L3A6NCW0 530 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 USP17L4A6NCW7 530 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 ZEB2O60315 1214 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 YWHAEP62258 255 aaKnown RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CFAP157Q5JU67 520 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 USP17L1Q7RTZ2 530 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 C2orf69Q8N8R5 385 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 MYO1AQ9UBC5 1043 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 BCRP11274 1271 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 GSDMBQ8TAX9 411 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CCDC17Q96LX7 622 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 KCNK9Q9NPC2 374 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 SWAP70Q9UH65 585 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 NUB1Q9Y5A7 615 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 HSPD1P10809 573 aaKnown RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CYP4A11Q02928 519 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 PPP2R5CQ13362 524 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 PPANQ9NQ55 473 aaKnown RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 RNF181Q9P0P0 153 aa9.11□□□□□ -0.95
SYNE2-220ENST00000555612 SEPT9Q9UHD8 586 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-220ENST00000555612 CAPN9O14815 690 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 RBM6P78332 1123 aaKnown RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 MAP7D1Q3KQU3 841 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SLFN12Q8IYM2 578 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SMC1BQ8NDV3 1235 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 UBE2Q2Q8WVN8 375 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 NELFBQ8WX92 580 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 IWS1Q96ST2 819 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 AMNQ9BXJ7 453 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SEC24BO95487 1268 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SLC16A2P36021 539 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 GRAPQ13588 217 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 MCM6Q14566 821 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 TBC1D10BQ4KMP7 808 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 MCTP2Q6DN12 878 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 ZNF365Q70YC5 407 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 NEK8Q86SG6 692 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 GRAPLQ8TC17 118 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SSH3Q8TE77 659 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 BAG1Q99933 345 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 NSRP1Q9H0G5 558 aaKnown RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 SCG2P13521 617 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 KRT26Q7Z3Y9 468 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 GTF3C6Q969F1 213 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 DDX23Q9BUQ8 820 aaKnown RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 ADD3Q9UEY8 706 aaKnown RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 EN1Q05925 392 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 PFDN4Q9NQP4 134 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 RHOXF2BP0C7M4 288 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 TMEM191BP0C7N4 346 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 POSTNQ15063 836 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 CDC37L1Q7L3B6 337 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 NLRP10Q86W26 655 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 RHOXF2Q9BQY4 288 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 PARP2Q9UGN5 583 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 MYOM2P54296 1465 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 ARHGAP31Q2M1Z3 1444 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 ZNF202O95125 648 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 FGAP02671 866 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 DLATP10515 647 aaKnown RBP9.1□□□□□ -0.95
SYNE2-220ENST00000555612 DIXDC1Q155Q3 683 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 UBL4BQ8N7F7 174 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 KIF24Q5T7B8 1368 aa9.1□□□□□ -0.95
SYNE2-220ENST00000555612 TTLL1O95922 423 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 OATP04181 439 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 RNASELQ05823 741 aaKnown RBP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 DMP1Q13316 513 aaPredicted RBP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 HAUS2Q9NVX0 235 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 TFDP1Q14186 410 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 V9GYY5 206 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms