RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 MAD2L2Q9UI95 211 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 USP17L10C9JJH3 530 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 HMGCS2P54868 508 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 EVCP57679 992 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 PNMA8AQ86V59 439 aaPredicted RBP11.79□□□□□ -0.52
NEK9-205ENST00000555405 TCP11L1Q9NUJ3 509 aa11.79□□□□□ -0.52
NEK9-205ENST00000555405 F13A1P00488 732 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 SMARCC2Q8TAQ2 1214 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 RASGRP4Q8TDF6 673 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 FTOQ9C0B1 505 aaKnown RBP eCLIP11.78□□□□□ -0.52
NEK9-205ENST00000555405 CNPY2Q9Y2B0 182 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 BTBD18B2RXH4 712 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 GOLGA6L22H0YM25 854 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 XBP1P17861 261 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 GNAQP50148 359 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 RRP36Q96EU6 259 aaKnown RBP11.78□□□□□ -0.52
NEK9-205ENST00000555405 UIMC1Q96RL1 719 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 GPBP1L1Q9HC44 474 aaPredicted RBP11.78□□□□□ -0.52
NEK9-205ENST00000555405 ATRNL1Q5VV63 1379 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 LAMA4Q16363 1823 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 ARFGEF1Q9Y6D6 1849 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 CYTH3O43739 400 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 DEXIO95424 95 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 BAG4O95429 457 aaKnown RBP11.78□□□□□ -0.52
NEK9-205ENST00000555405 FMNL1O95466 1100 aaPredicted RBP11.78□□□□□ -0.52
NEK9-205ENST00000555405 BRD1O95696 1058 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 BMP3P12645 472 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 NAPAP54920 295 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 NR5A1Q13285 461 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 GRM4Q14833 912 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 KIAA1755Q5JYT7 1200 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 NYAP2Q9P242 653 aa11.78□□□□□ -0.52
NEK9-205ENST00000555405 NAV1Q8NEY1 1877 aa11.77□□□□□ -0.52
NEK9-205ENST00000555405 MAST2Q6P0Q8 1798 aa11.77□□□□□ -0.52
NEK9-205ENST00000555405 USP2O75604 605 aaPredicted RBP11.77□□□□□ -0.53
NEK9-205ENST00000555405 HOOK2Q96ED9 719 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 HOMER2Q9NSB8 354 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 CTNND1O60716 968 aaKnown RBP11.77□□□□□ -0.53
NEK9-205ENST00000555405 CELF2O95319 508 aaKnown RBP11.77□□□□□ -0.53
NEK9-205ENST00000555405 GADL1Q6ZQY3 521 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 ADGRF4Q8IZF3 695 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 FBXL16Q8N461 479 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 WASF1Q92558 559 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 MTA3Q9BTC8 594 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 GOPCQ9HD26 462 aa11.77□□□□□ -0.53
NEK9-205ENST00000555405 PHF20L1A8MW92 1017 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 IREB2P48200 963 aaKnown RBP11.76□□□□□ -0.53
NEK9-205ENST00000555405 MAP3K9P80192 1104 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 ZNF543Q08ER8 600 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 VGLL4Q14135 290 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 DIS3L2Q8IYB7 885 aaKnown RBP11.76□□□□□ -0.53
NEK9-205ENST00000555405 FBXO18Q8NFZ0 1043 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 OXER1Q8TDS5 423 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 KLRG1Q96E93 195 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 L3MBTL3Q96JM7 780 aaPredicted RBP11.76□□□□□ -0.53
NEK9-205ENST00000555405 SBF1O95248 1867 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 FLOT1O75955 427 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 PLS1Q14651 629 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 SF3A1Q15459 793 aaKnown RBP11.76□□□□□ -0.53
NEK9-205ENST00000555405 PGBD1Q96JS3 809 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 GOLGA6L4A6NEF3 574 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 SCG2P13521 617 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 MMP14P50281 582 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 SLC35G1Q2M3R5 365 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 SCYL3Q8IZE3 742 aa11.76□□□□□ -0.53
NEK9-205ENST00000555405 IGKV6D-41A0A0C4DH26 115 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 PALM3A6NDB9 673 aaPredicted RBP11.75□□□□□ -0.53
NEK9-205ENST00000555405 MCM4P33991 863 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 JAKMIP3Q5VZ66 844 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 IL27Q8NEV9 243 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 SLC10A4Q96EP9 437 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 PGAP2Q9UHJ9 254 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 CNTNAP5Q8WYK1 1306 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 TBC1D12O60347 775 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 PTPRAP18433 802 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 DDIT3P35638 169 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 ARMC9Q7Z3E5 817 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 RNF26Q9BY78 433 aaPredicted RBP11.75□□□□□ -0.53
NEK9-205ENST00000555405 PEX10O60683 326 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 ASPRV1Q53RT3 343 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 NOM1Q5C9Z4 860 aaKnown RBP11.75□□□□□ -0.53
NEK9-205ENST00000555405 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.75□□□□□ -0.53
NEK9-205ENST00000555405 ANKS1AQ92625 1134 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 VCPKMTQ9H867 229 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 TMX2Q9Y320 296 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 ATP6V1DQ9Y5K8 247 aa11.75□□□□□ -0.53
NEK9-205ENST00000555405 FAM205CA6NFA0 338 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 KIF28PB7ZC32 967 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 PRPF3O43395 683 aaKnown RBP11.74□□□□□ -0.53
NEK9-205ENST00000555405 PKN1Q16512 942 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 PPP4R3BQ5MIZ7 849 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 WDR78Q5VTH9 848 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 ZNF280CQ8ND82 737 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 SH2D4AQ9H788 454 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 TMOD4Q9NZQ9 345 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 BIN2Q9UBW5 565 aaPredicted RBP11.74□□□□□ -0.53
NEK9-205ENST00000555405 PPP2R5BQ15173 497 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 GPATCH4Q5T3I0 446 aaKnown RBP11.74□□□□□ -0.53
NEK9-205ENST00000555405 WWC2Q6AWC2 1192 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms