RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 SGPP1Q9BX95 441 aa8.94□□□□□ -0.98
VRK1-203ENST00000555067 ASPNQ9BXN1 380 aa8.94□□□□□ -0.98
VRK1-203ENST00000555067 GZF1Q9H116 711 aaPredicted RBP8.94□□□□□ -0.98
VRK1-203ENST00000555067 KLHL3Q9UH77 587 aa8.94□□□□□ -0.98
VRK1-203ENST00000555067 POLR3KQ9Y2Y1 108 aaPredicted RBP8.94□□□□□ -0.98
VRK1-203ENST00000555067 GRIN3BO60391 1043 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 GARTP22102 1010 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 MLECQ14165 292 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 SKOR2Q2VWA4 1001 aaPredicted RBP8.93□□□□□ -0.98
VRK1-203ENST00000555067 FAM196AQ6ZSG2 479 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 ERMP1Q7Z2K6 904 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 BCL11AQ9H165 835 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 EBF1Q9UH73 591 aa8.93□□□□□ -0.98
VRK1-203ENST00000555067 MINDY4BA8MYZ0 360 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 NFKB2Q00653 900 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 CWF19L2Q2TBE0 894 aaKnown RBP8.92□□□□□ -0.98
VRK1-203ENST00000555067 KREMEN1Q96MU8 473 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 LRRC3Q9BY71 257 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 KBTBD4Q9NVX7 518 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 PCDHA11Q9Y5I1 949 aa8.92□□□□□ -0.98
VRK1-203ENST00000555067 ROBO2Q9HCK4 1378 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 CHURC1-FNTBB4DL54 471 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 RFXAPO00287 272 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 LTKP29376 864 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 CHRNEQ04844 493 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 TMEM132EQ6IEE7 984 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 SPPL2CQ8IUH8 684 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 PHACTR4Q8IZ21 702 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 KCNQ5Q9NR82 932 aa8.91□□□□□ -0.98
VRK1-203ENST00000555067 SUPT16HQ9Y5B9 1047 aaKnown RBP8.9□□□□□ -0.98
VRK1-203ENST00000555067 PDE6BP35913 854 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 CHMP4BP1P59074 171 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 ZNF326Q5BKZ1 582 aaKnown RBP8.89□□□□□ -0.99
VRK1-203ENST00000555067 ANKS4BQ8N8V4 417 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 FBXO27Q8NI29 283 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 SYTL4Q96C24 671 aaPredicted RBP8.89□□□□□ -0.99
VRK1-203ENST00000555067 BCL2L13Q9BXK5 485 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 ZNF281Q9Y2X9 895 aa8.89□□□□□ -0.99
VRK1-203ENST00000555067 RBM47A0AV96 593 aaKnown RBP8.88□□□□□ -0.99
VRK1-203ENST00000555067 PSPNO60542 156 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 DNAJA2O60884 412 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 EIF4A3P38919 411 aaKnown RBP8.88□□□□□ -0.99
VRK1-203ENST00000555067 TEKQ02763 1124 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 FBXL19Q6PCT2 694 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 GGNQ86UU5 652 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 LINC01599Q8WXQ3 324 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 DACT3Q96B18 629 aaPredicted RBP8.88□□□□□ -0.99
VRK1-203ENST00000555067 MBD1Q9UIS9 605 aaPredicted RBP8.88□□□□□ -0.99
VRK1-203ENST00000555067 GPR160Q9UJ42 338 aa8.88□□□□□ -0.99
VRK1-203ENST00000555067 OTOL1A6NHN0 477 aaPredicted RBP8.87□□□□□ -0.99
VRK1-203ENST00000555067 NOTOA8MTQ0 251 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 RGS13O14921 159 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 TLR3O15455 904 aaKnown RBP8.87□□□□□ -0.99
VRK1-203ENST00000555067 LRRN2O75325 713 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 GBP1P32455 592 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 RNF4P78317 190 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 PANK1Q8TE04 598 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 SIGLEC10Q96LC7 697 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 KIF2CQ99661 725 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 COPRSQ9NQ92 184 aa8.87□□□□□ -0.99
VRK1-203ENST00000555067 HRKO00198 91 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 PI3P19957 117 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 DUSP4Q13115 394 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 MRPL58Q14197 206 aaKnown RBP8.86□□□□□ -0.99
VRK1-203ENST00000555067 CLEC16AQ2KHT3 1053 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 HS2ST1Q7LGA3 356 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 PRRT2Q7Z6L0 340 aaPredicted RBP8.86□□□□□ -0.99
VRK1-203ENST00000555067 GIPC2Q8TF65 315 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 G6PC3Q9BUM1 346 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 ASCC2Q9H1I8 757 aaPredicted RBP8.86□□□□□ -0.99
VRK1-203ENST00000555067 GMIPQ9P107 970 aa8.86□□□□□ -0.99
VRK1-203ENST00000555067 OR14I1A6ND48 311 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 GREM1O60565 184 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 SASH1O94885 1247 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 ATE1O95260 518 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 RAG1P15918 1043 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 VWCEQ96DN2 955 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 BRMS1Q9HCU9 246 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 PCDHB14Q9Y5E9 798 aa8.85□□□□□ -0.99
VRK1-203ENST00000555067 SHISA3A0PJX4 238 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 SLC22A31A6NKX4 558 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 EFEMP2O95967 443 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 GALK1P51570 392 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 ARSHQ5FYA8 562 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 NLRX1Q86UT6 975 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 ENOX1Q8TC92 643 aaKnown RBP8.84□□□□□ -0.99
VRK1-203ENST00000555067 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.84□□□□□ -0.99
VRK1-203ENST00000555067 EPB41L4AQ9HCS5 686 aaPredicted RBP8.84□□□□□ -0.99
VRK1-203ENST00000555067 GGT7Q9UJ14 662 aa8.84□□□□□ -0.99
VRK1-203ENST00000555067 CELA3BP08861 270 aa8.83□□□□□ -1
VRK1-203ENST00000555067 ZNF296Q8WUU4 475 aaPredicted RBP8.83□□□□□ -1
VRK1-203ENST00000555067 IRAK3Q9Y616 596 aa8.83□□□□□ -1
VRK1-203ENST00000555067 UBOX5O94941 541 aa8.82□□□□□ -1
VRK1-203ENST00000555067 AFF3P51826 1226 aaKnown RBP8.82□□□□□ -1
VRK1-203ENST00000555067 NMIQ13287 307 aaPredicted RBP8.82□□□□□ -1
VRK1-203ENST00000555067 SYTL5Q8TDW5 730 aaPredicted RBP8.82□□□□□ -1
VRK1-203ENST00000555067 ADRB1P08588 477 aa8.81□□□□□ -1
VRK1-203ENST00000555067 SRSF3P84103 164 aaKnown RBP8.81□□□□□ -1
VRK1-203ENST00000555067 RAD51AP2Q09MP3 1159 aa8.81□□□□□ -1
VRK1-203ENST00000555067 CDCP2Q5VXM1 449 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms