RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 TMEM179Q6ZVK1 233 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 PRRT2Q7Z6L0 340 aaPredicted RBP9.92□□□□□ -0.82
PSEN1-209ENST00000553855 IFNL3Q8IZI9 196 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 ZNF444Q8N0Y2 327 aaPredicted RBP9.92□□□□□ -0.82
PSEN1-209ENST00000553855 FAM43AQ8N2R8 423 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 SMCR8Q8TEV9 937 aaPredicted RBP9.92□□□□□ -0.82
PSEN1-209ENST00000553855 ZNF296Q8WUU4 475 aaPredicted RBP9.92□□□□□ -0.82
PSEN1-209ENST00000553855 PTPN18Q99952 460 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 WDR18Q9BV38 432 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 DNAJC18Q9H819 358 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 ARHGEF10LQ9HCE6 1279 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 PLSCR2Q9NRY7 297 aa9.92□□□□□ -0.82
PSEN1-209ENST00000553855 GSG1L2A8MUP6 293 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 CYP2D6P10635 497 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 SHMT1P34896 483 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 CDK8P49336 464 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 HMGCS2P54868 508 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 BACE1P56817 501 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 IRX3P78415 501 aaPredicted RBP9.91□□□□□ -0.82
PSEN1-209ENST00000553855 SP3Q02447 781 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 GABPAQ06546 454 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 DGKZQ13574 1117 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 MTMR2Q13614 643 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 TTC22Q5TAA0 569 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 USP17L2Q6R6M4 530 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 C16orf86Q6ZW13 317 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 CTU1Q7Z7A3 348 aaKnown RBP9.91□□□□□ -0.82
PSEN1-209ENST00000553855 CCDC84Q86UT8 332 aaPredicted RBP9.91□□□□□ -0.82
PSEN1-209ENST00000553855 DYNLL2Q96FJ2 89 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 SEC62Q99442 399 aaKnown RBP9.91□□□□□ -0.82
PSEN1-209ENST00000553855 AGTPBP1Q9UPW5 1226 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 SLC45A1Q9Y2W3 748 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 OTOFQ9HC10 1997 aa9.91□□□□□ -0.82
PSEN1-209ENST00000553855 MYO5AQ9Y4I1 1855 aaKnown RBP9.91□□□□□ -0.82
PSEN1-209ENST00000553855 CCDC171Q6TFL3 1326 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 TLR2O60603 784 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 LILRB3O75022 631 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 ATP2B2Q01814 1243 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 NMIQ13287 307 aaPredicted RBP9.9□□□□□ -0.82
PSEN1-209ENST00000553855 PKN2Q16513 984 aaKnown RBP9.9□□□□□ -0.82
PSEN1-209ENST00000553855 CSPP1Q1MSJ5 1256 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 ERICH6BQ5W0A0 696 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 POTEEQ6S8J3 1075 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 CWC27Q6UX04 472 aaKnown RBP9.9□□□□□ -0.82
PSEN1-209ENST00000553855 CCDC129Q6ZRS4 1044 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 STK11IPQ8N1F8 1099 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 FAM227BQ96M60 508 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 TOMM22Q9NS69 142 aa9.9□□□□□ -0.82
PSEN1-209ENST00000553855 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.9□□□□□ -0.82
PSEN1-209ENST00000553855 CYP2D7A0A087X1C5 515 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 NDUFV2P19404 249 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 HOXD10P28358 340 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 ICA1Q05084 483 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 PPARAQ07869 468 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 RRP1BQ14684 758 aaKnown RBP9.89□□□□□ -0.83
PSEN1-209ENST00000553855 SEPT2Q15019 361 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 ZYXQ15942 572 aaKnown RBP9.89□□□□□ -0.83
PSEN1-209ENST00000553855 QPCTQ16769 361 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 CASC1Q6TDU7 716 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 CCAR1Q8IX12 1150 aaKnown RBP9.89□□□□□ -0.83
PSEN1-209ENST00000553855 SLC44A5Q8NCS7 719 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 GTF3C2Q8WUA4 911 aaPredicted RBP9.89□□□□□ -0.83
PSEN1-209ENST00000553855 KANSL2Q9H9L4 492 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 EFCC1Q9HA90 598 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 GDPD2Q9HCC8 539 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 CTNNA3Q9UI47 895 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 DOCK1Q14185 1865 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 NAV1Q8NEY1 1877 aa9.89□□□□□ -0.83
PSEN1-209ENST00000553855 MYH1P12882 1939 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 MYH7P12883 1935 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 A0A0D9SFI3 127 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 TSPY3P0CV98 308 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 TSPY8P0CW00 308 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 GCLCP48506 637 aaPredicted RBP9.88□□□□□ -0.83
PSEN1-209ENST00000553855 ALX1Q15699 326 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 GPAT2Q6NUI2 795 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 RDH13Q8NBN7 331 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 KIAA1683Q9H0B3 1180 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 RNF41Q9H4P4 317 aaPredicted RBP9.88□□□□□ -0.83
PSEN1-209ENST00000553855 CWC22Q9HCG8 908 aaKnown RBP9.88□□□□□ -0.83
PSEN1-209ENST00000553855 EPB41L4AQ9HCS5 686 aaPredicted RBP9.88□□□□□ -0.83
PSEN1-209ENST00000553855 PRM3Q9NNZ6 103 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 CPA4Q9UI42 421 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 TRIM17Q9Y577 477 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 FOCADQ5VW36 1801 aa9.88□□□□□ -0.83
PSEN1-209ENST00000553855 RAD50Q92878 1312 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 TSPY2A6NKD2 308 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L15C9J2P7 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L13C9JLJ4 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L11C9JVI0 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L18D6R9N7 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L22D6RA61 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L17D6RBQ6 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L19D6RCP7 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 USP17L20D6RJB6 530 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 ZNF213O14771 459 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 FMNL1O95466 1100 aaPredicted RBP9.87□□□□□ -0.83
PSEN1-209ENST00000553855 GNRH1P01148 92 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 CYP2C8P10632 490 aa9.87□□□□□ -0.83
PSEN1-209ENST00000553855 HSPD1P10809 573 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms