RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ATP2B1P20020 1258 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 SOGA3Q5TF21 947 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 BARHL2Q9NY43 387 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 KCNH3Q9ULD8 1083 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 PCDHAC2Q9Y5I4 1007 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 CD2APQ9Y5K6 639 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 ASPRV1Q53RT3 343 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 TTC38Q5R3I4 469 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 LUZP1Q86V48 1076 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 ZFPM1Q8IX07 1006 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 PI4KBQ9UBF8 816 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 CCDC39Q9UFE4 941 aa30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 GREB1LQ9C091 1923 aaPredicted RBP30.15■■■□□ 2.42
CCDC88C-205ENST00000553403 ESPNB1AK53 854 aa30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 STXBP3O00186 592 aa30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 GOLGA8HP0CJ92 632 aa30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 WWC2Q6AWC2 1192 aa30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 USP17L2Q6R6M4 530 aa30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 GPKOWQ92917 476 aaPredicted RBP eCLIP30.14■■■□□ 2.42
CCDC88C-205ENST00000553403 SNHG28P0DPA3 235 aa30.14■■■□□ 2.41
CCDC88C-205ENST00000553403 PDHBP11177 359 aa30.14■■■□□ 2.41
CCDC88C-205ENST00000553403 CFAP100Q494V2 611 aa30.14■■■□□ 2.41
CCDC88C-205ENST00000553403 FERMT2Q96AC1 680 aa30.14■■■□□ 2.41
CCDC88C-205ENST00000553403 RRP36Q96EU6 259 aaKnown RBP30.14■■■□□ 2.41
CCDC88C-205ENST00000553403 ENTPD3O75355 529 aa30.13■■■□□ 2.41
CCDC88C-205ENST00000553403 RSBN1LQ6PCB5 846 aaPredicted RBP30.13■■■□□ 2.41
CCDC88C-205ENST00000553403 FOXP4Q8IVH2 680 aaPredicted RBP30.13■■■□□ 2.41
CCDC88C-205ENST00000553403 CCDC12Q8WUD4 166 aaPredicted RBP30.13■■■□□ 2.41
CCDC88C-205ENST00000553403 BAZ2BQ9UIF8 2168 aaKnown RBP30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 COL2A1P02458 1487 aaPredicted RBP30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 USP17L5A8MUK1 530 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 TGFB2P61812 414 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 PIK3AP1Q6ZUJ8 805 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 HEATR3Q7Z4Q2 680 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 RIOX1Q9H6W3 641 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 SIPA1L1O43166 1804 aa30.12■■■□□ 2.41
CCDC88C-205ENST00000553403 M0R2N6 131 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 VIL1P09327 827 aaKnown RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 CACNB3P54284 484 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 IQCB1Q15051 598 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 NOM1Q5C9Z4 860 aaKnown RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 KRBA2Q6ZNG9 492 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 C11orf57Q6ZUT1 292 aaPredicted RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 LARGE2Q8N3Y3 721 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 CLIP2Q9UDT6 1046 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 DDTLA6NHG4 134 aaPredicted RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 GRIN1Q05586 938 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 TCP10Q12799 353 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 ZRSR1Q15695 479 aaKnown RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 TYW1BQ6NUM6 668 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 CEP57L1Q8IYX8 460 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 NAT10Q9H0A0 1025 aaKnown RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 DNAJC18Q9H819 358 aa30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 RRAGDQ9NQL2 400 aaPredicted RBP30.11■■■□□ 2.41
CCDC88C-205ENST00000553403 hCG_1984214I3L0E3 225 aa30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 SH3BP5LQ7L8J4 393 aa30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 RASGRP2Q7LDG7 609 aa30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 ZSCAN30Q86W11 494 aa30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 METTL16Q86W50 562 aaKnown RBP30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 ZNF713Q8N859 430 aaPredicted RBP30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 SEC63Q9UGP8 760 aaKnown RBP30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 ATRNL1Q5VV63 1379 aa30.1■■■□□ 2.41
CCDC88C-205ENST00000553403 AP5Z1O43299 807 aa30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 ATP2C1P98194 919 aaPredicted RBP30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 ZNF174Q15697 407 aa30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 LRRC47Q8N1G4 583 aaKnown RBP30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 CSRNP2Q9H175 543 aa30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 TDRD3Q9H7E2 651 aaKnown RBP30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 TUBE1Q9UJT0 475 aa30.09■■■□□ 2.41
CCDC88C-205ENST00000553403 NLRP12P59046 1061 aa30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 TATDN1Q6P1N9 297 aa30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 CNNM3Q8NE01 707 aa30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 GMLQ99445 158 aa30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 ZMYND12Q9H0C1 365 aa30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 HOOK1Q9UJC3 728 aaKnown RBP30.08■■■□□ 2.41
CCDC88C-205ENST00000553403 MPHOSPH10O00566 681 aaKnown RBP30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 WNT7AO00755 349 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 LONRF3Q496Y0 759 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 ZSCAN29Q8IWY8 852 aaPredicted RBP30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 ERCC4Q92889 916 aaPredicted RBP30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 PRMT6Q96LA8 375 aaPredicted RBP30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 TRIM34Q9BYJ4 488 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 ZNF277Q9NRM2 450 aaPredicted RBP30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 PIM2Q9P1W9 311 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 HDAC9Q9UKV0 1011 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 PCDHA6Q9UN73 950 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 PCDHA8Q9Y5H6 950 aa30.07■■■□□ 2.41
CCDC88C-205ENST00000553403 ADAMTS3O15072 1205 aa30.07■■■□□ 2.4
CCDC88C-205ENST00000553403 ZNF543Q08ER8 600 aa30.07■■■□□ 2.4
CCDC88C-205ENST00000553403 CERKLQ49MI3 558 aaPredicted RBP30.07■■■□□ 2.4
CCDC88C-205ENST00000553403 SPECC1Q5M775 1068 aa30.07■■■□□ 2.4
CCDC88C-205ENST00000553403 BPIFA3Q9BQP9 254 aa30.07■■■□□ 2.4
CCDC88C-205ENST00000553403 CCDC194A0A1B0GVG4 234 aa30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 GOLGA6L19H0YKK7 550 aa30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 PSMD14O00487 310 aa30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 PTMAP06454 111 aaKnown RBP30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 EIF6P56537 245 aaKnown RBP30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 PLCB2Q00722 1185 aa30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 CPVLQ9H3G5 476 aa30.06■■■□□ 2.4
CCDC88C-205ENST00000553403 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms