RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 C9orf50Q5SZB4 431 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 NAA16Q6N069 864 aaPredicted RBP12.89□□□□□ -0.35
VPS29-208ENST00000550267 NPLOC4Q8TAT6 608 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 MYLIPQ8WY64 445 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 LPAR1Q92633 364 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 SEMA6BQ9H3T3 888 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 RTN4Q9NQC3 1192 aaKnown RBP12.89□□□□□ -0.35
VPS29-208ENST00000550267 GINM1Q9NU53 330 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 SAP30BPQ9UHR5 308 aaKnown RBP12.89□□□□□ -0.35
VPS29-208ENST00000550267 ATP11BQ9Y2G3 1177 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 RABGAP1Q9Y3P9 1069 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 LTBP2Q14767 1821 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 SLC15A5A6NIM6 579 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 DNM1LO00429 736 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 GLRX3O76003 335 aaKnown RBP12.88□□□□□ -0.35
VPS29-208ENST00000550267 CYP2C19P33261 490 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 ATP2B2Q01814 1243 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 GJC2Q5T442 439 aaPredicted RBP12.88□□□□□ -0.35
VPS29-208ENST00000550267 ADGRA1Q86SQ6 560 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 TRPV1Q8NER1 839 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 PRDM6Q9NQX0 595 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 SNRKQ9NRH2 765 aa12.88□□□□□ -0.35
VPS29-208ENST00000550267 SPTBN5Q9NRC6 3674 aaKnown RBP12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L15C9J2P7 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L13C9JLJ4 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L11C9JVI0 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L18D6R9N7 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L22D6RA61 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L17D6RBQ6 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L19D6RCP7 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L20D6RJB6 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 MSCO60682 206 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 GH2P01242 217 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 UQCRFS1P1P0C7P4 283 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 MLLT3P42568 568 aaPredicted RBP12.87□□□□□ -0.35
VPS29-208ENST00000550267 CCNA1P78396 465 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 USP17L24Q0WX57 530 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 C12orf42Q96LP6 360 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 FEZ1Q99689 392 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 API5Q9BZZ5 524 aaKnown RBP12.87□□□□□ -0.35
VPS29-208ENST00000550267 TTYH1Q9H313 450 aaPredicted RBP12.87□□□□□ -0.35
VPS29-208ENST00000550267 PRDM5Q9NQX1 630 aaPredicted RBP12.87□□□□□ -0.35
VPS29-208ENST00000550267 BTBD7Q9P203 1132 aa12.87□□□□□ -0.35
VPS29-208ENST00000550267 HLA-DOAP06340 250 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 HOXC6P09630 235 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 MTX1Q13505 466 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 GRB14Q14449 540 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 ANO1Q5XXA6 986 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 SLC39A5Q6ZMH5 540 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 CATSPERGQ6ZRH7 1159 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 BADQ92934 168 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 PCDHB3Q9Y5E6 796 aa12.86□□□□□ -0.35
VPS29-208ENST00000550267 CYBAP13498 195 aa12.85□□□□□ -0.35
VPS29-208ENST00000550267 DYNLL1P63167 89 aaKnown RBP12.85□□□□□ -0.35
VPS29-208ENST00000550267 PTGDRQ13258 359 aa12.85□□□□□ -0.35
VPS29-208ENST00000550267 TRIM60Q495X7 471 aa12.85□□□□□ -0.35
VPS29-208ENST00000550267 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
VPS29-208ENST00000550267 VCANP13611 3396 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 KBTBD13C9JR72 458 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 IGHA2P01877 340 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 CYP2E1P05181 493 aaPredicted RBP12.84□□□□□ -0.35
VPS29-208ENST00000550267 GNAI3P08754 354 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 FOSL2P15408 326 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 VCAM1P19320 739 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 DNAJB2P25686 324 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 SMAD3P84022 425 aaKnown RBP12.84□□□□□ -0.35
VPS29-208ENST00000550267 RAB3GAP1Q15042 981 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 TTC39AQ5SRH9 613 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 ATF7IPQ6VMQ6 1270 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 SH3RF1Q7Z6J0 888 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 ARRDC4Q8NCT1 418 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 ACER1Q8TDN7 264 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 PDLIM7Q9NR12 457 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 EYSQ5T1H1 3165 aa12.84□□□□□ -0.35
VPS29-208ENST00000550267 FOCADQ5VW36 1801 aa12.83□□□□□ -0.35
VPS29-208ENST00000550267 CDK5RAP2Q96SN8 1893 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 PNMA6EA0A0J9YXQ4 647 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 TRIM43BA6NCK2 446 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 USP14P54578 494 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 G3BP1Q13283 466 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS29-208ENST00000550267 TATDN1Q6P1N9 297 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 LBX2Q6XYB7 198 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 TRIM43Q96BQ3 446 aaPredicted RBP12.83□□□□□ -0.36
VPS29-208ENST00000550267 DBNDD2Q9BQY9 259 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 KIAA1683Q9H0B3 1180 aa12.83□□□□□ -0.36
VPS29-208ENST00000550267 RPAP3Q9H6T3 665 aaPredicted RBP12.83□□□□□ -0.36
VPS29-208ENST00000550267 PIH1D3Q9NQM4 214 aaKnown RBP12.83□□□□□ -0.36
VPS29-208ENST00000550267 CYP7A1P22680 504 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 ADORA2AP29274 412 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 ADCYAP1R1P41586 468 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 ZAP70P43403 619 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 SNX17Q15036 470 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 DPP9Q86TI2 863 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 SYMPKQ92797 1274 aaKnown RBP12.82□□□□□ -0.36
VPS29-208ENST00000550267 FERMT2Q96AC1 680 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 TMEM134Q9H6X4 195 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 RLFQ13129 1914 aa12.82□□□□□ -0.36
VPS29-208ENST00000550267 SEPT4O43236 478 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 USP5P45974 858 aa12.81□□□□□ -0.36
VPS29-208ENST00000550267 LRRC41Q15345 812 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms