RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 NYAP2Q9P242 653 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 RPTORQ8N122 1335 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 SLC15A5A6NIM6 579 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 TFRCP02786 760 aaKnown RBP17.47■□□□□ 0.39
LINC00661-203ENST00000549131 CTDSPL2Q05D32 466 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 GRB14Q14449 540 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 CCL14Q16627 93 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 CEP95Q96GE4 821 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 NUP88Q99567 741 aaPredicted RBP17.47■□□□□ 0.39
LINC00661-203ENST00000549131 FBXO28Q9NVF7 368 aa17.47■□□□□ 0.39
LINC00661-203ENST00000549131 IGKV6D-41A0A0C4DH26 115 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 ERCC3P19447 782 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 PTPREP23469 700 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 MCMDC2Q4G0Z9 681 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 FAM47AQ5JRC9 791 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 LRRC47Q8N1G4 583 aaKnown RBP17.46■□□□□ 0.39
LINC00661-203ENST00000549131 CLIP2Q9UDT6 1046 aa17.46■□□□□ 0.39
LINC00661-203ENST00000549131 CCDC171Q6TFL3 1326 aa17.46■□□□□ 0.38
LINC00661-203ENST00000549131 TTLL1O95922 423 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 NDUFB10O96000 172 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 ZNF589Q86UQ0 364 aaPredicted RBP17.45■□□□□ 0.38
LINC00661-203ENST00000549131 NCAPG2Q86XI2 1143 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 TICAM2Q86XR7 235 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 SHCBP1Q8NEM2 672 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 OSBPL3Q9H4L5 887 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 MTMR4Q9NYA4 1195 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 PPP1R9AQ9ULJ8 1098 aa17.45■□□□□ 0.38
LINC00661-203ENST00000549131 TSPY2A6NKD2 308 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 F5H6K3 240 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 ADORA2AP29274 412 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 TFAP4Q01664 338 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 KLRC3Q07444 240 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 TMEM132BQ14DG7 1078 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 MAP3K21Q5TCX8 1036 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 NEDD1Q8NHV4 660 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 SLF1Q9BQI6 1058 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 TOMM22Q9NS69 142 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 DIAPH3Q9NSV4 1193 aa17.44■□□□□ 0.38
LINC00661-203ENST00000549131 ISY1Q9ULR0 285 aaKnown RBP17.44■□□□□ 0.38
LINC00661-203ENST00000549131 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.44■□□□□ 0.38
LINC00661-203ENST00000549131 VWA5AO00534 786 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 MFAP1P55081 439 aaKnown RBP17.43■□□□□ 0.38
LINC00661-203ENST00000549131 CACNB2Q08289 660 aaPredicted RBP17.43■□□□□ 0.38
LINC00661-203ENST00000549131 MFSD14CQ5VZR4 134 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 UBE2Q1Q7Z7E8 422 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 DPP9Q86TI2 863 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 HTATIP2Q9BUP3 242 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 CRISPLD2Q9H0B8 497 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 MROH8Q9H579 483 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 FLRT1Q9NZU1 646 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 ZMYM6O95789 1325 aa17.43■□□□□ 0.38
LINC00661-203ENST00000549131 RANBP6O60518 1105 aaKnown RBP17.42■□□□□ 0.38
LINC00661-203ENST00000549131 HOXC6P09630 235 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 HSPD1P10809 573 aaKnown RBP17.42■□□□□ 0.38
LINC00661-203ENST00000549131 SDSP20132 328 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 CCND3P30281 292 aaPredicted RBP17.42■□□□□ 0.38
LINC00661-203ENST00000549131 ALX1Q15699 326 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 GMCL1P1Q8NEA9 526 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 NPLOC4Q8TAT6 608 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 DPF3Q92784 378 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 INCENPQ9NQS7 918 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 ANAPC4Q9UJX5 808 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 SYNPO2Q9UMS6 1093 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 ADAMTS5Q9UNA0 930 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 STX8Q9UNK0 236 aa17.42■□□□□ 0.38
LINC00661-203ENST00000549131 STRNO43815 780 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 SLC25A27O95847 323 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 FGAP02671 866 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 CAPN2P17655 700 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 RRP12Q5JTH9 1297 aaKnown RBP17.41■□□□□ 0.38
LINC00661-203ENST00000549131 PPP4R3BQ5MIZ7 849 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 CWC27Q6UX04 472 aaKnown RBP17.41■□□□□ 0.38
LINC00661-203ENST00000549131 DIS3LQ8TF46 1054 aaKnown RBP17.41■□□□□ 0.38
LINC00661-203ENST00000549131 MKL1Q969V6 931 aa17.41■□□□□ 0.38
LINC00661-203ENST00000549131 NMT2O60551 498 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 FCER1AP12319 257 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 STAT3P40763 770 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 HAND2P61296 217 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 SLFN13Q68D06 897 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 RIOX2Q8IUF8 465 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 ANKLE1Q8NAG6 615 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 KIFC2Q96AC6 838 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 CHMP4CQ96CF2 233 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 PAWRQ96IZ0 340 aaKnown RBP17.4■□□□□ 0.38
LINC00661-203ENST00000549131 SLC5A4Q9NY91 659 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 ZNF214Q9UL59 606 aaPredicted RBP17.4■□□□□ 0.38
LINC00661-203ENST00000549131 CTDP1Q9Y5B0 961 aaPredicted RBP17.4■□□□□ 0.38
LINC00661-203ENST00000549131 TACC3Q9Y6A5 838 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 MCM3APO60318 1980 aa17.4■□□□□ 0.38
LINC00661-203ENST00000549131 HIP1O00291 1037 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 ORC4O43929 436 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 BMP3P12645 472 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 PDE4AP27815 886 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 CYP2C19P33261 490 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 COPB2P35606 906 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 KCTD2Q14681 263 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 SNRNP48Q6IEG0 339 aaKnown RBP17.39■□□□□ 0.37
LINC00661-203ENST00000549131 NECAB2Q7Z6G3 386 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 ABRAQ8N0Z2 381 aa17.39■□□□□ 0.37
LINC00661-203ENST00000549131 PRPF38AQ8NAV1 312 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms