RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MB21D1Q8N884 522 aa15.51■□□□□ 0.07
SCAF11-208ENST00000546534 CCDC8Q9H0W5 538 aaPredicted RBP15.51■□□□□ 0.07
SCAF11-208ENST00000546534 MROH8Q9H579 483 aa15.51■□□□□ 0.07
SCAF11-208ENST00000546534 ANTXR1Q9H6X2 564 aa15.51■□□□□ 0.07
SCAF11-208ENST00000546534 ZNF316A6NFI3 1004 aaPredicted RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 MPHOSPH10O00566 681 aaKnown RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 PQBP1O60828 265 aaKnown RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 SURF6O75683 361 aaKnown RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 PGK1P00558 417 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 POLR3DP05423 398 aaPredicted RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 RARBP10826 455 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 FCER1AP12319 257 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 FPGSQ05932 587 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 ZNF467Q7Z7K2 595 aaPredicted RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 SSH3Q8TE77 659 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 CLUAP1Q96AJ1 413 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 ATG4CQ96DT6 458 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 RIOK1Q9BRS2 568 aaKnown RBP15.5■□□□□ 0.07
SCAF11-208ENST00000546534 ZNF576Q9H609 170 aa15.5■□□□□ 0.07
SCAF11-208ENST00000546534 A0A1W2PQ45 241 aaPredicted RBP15.49■□□□□ 0.07
SCAF11-208ENST00000546534 A0A1W2PQY0 241 aa15.49■□□□□ 0.07
SCAF11-208ENST00000546534 IPO8O15397 1037 aaKnown RBP15.49■□□□□ 0.07
SCAF11-208ENST00000546534 BCAR3O75815 825 aa15.49■□□□□ 0.07
SCAF11-208ENST00000546534 FLOT1O75955 427 aa15.49■□□□□ 0.07
SCAF11-208ENST00000546534 RNF180Q86T96 592 aa15.49■□□□□ 0.07
SCAF11-208ENST00000546534 EAF2Q96CJ1 260 aaPredicted RBP15.49■□□□□ 0.07
SCAF11-208ENST00000546534 TMEM39AQ9NV64 488 aa15.49■□□□□ 0.07
SCAF11-208ENST00000546534 A0A0G2JMZ2 1700 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 TAL1P17542 331 aaPredicted RBP15.48■□□□□ 0.07
SCAF11-208ENST00000546534 ATP8B2P98198 1209 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 MAP3K12Q12852 859 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 SIAH1Q8IUQ4 282 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 FRAT1Q92837 279 aaPredicted RBP15.48■□□□□ 0.07
SCAF11-208ENST00000546534 PHF12Q96QT6 1004 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 RAPGEFL1Q9UHV5 662 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 NRBP1Q9UHY1 535 aa15.48■□□□□ 0.07
SCAF11-208ENST00000546534 MAP3K13O43283 966 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 PGK2P07205 417 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 FAAP100Q0VG06 881 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 TMEM132BQ14DG7 1078 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 ANKRD33Q7Z3H0 272 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 CLEC10AQ8IUN9 316 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 SPICE1Q8N0Z3 855 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 LENG1Q96BZ8 264 aaPredicted RBP15.47■□□□□ 0.07
SCAF11-208ENST00000546534 TIFAQ96CG3 184 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 TINF2Q9BSI4 451 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 MCM9Q9NXL9 1143 aa15.47■□□□□ 0.07
SCAF11-208ENST00000546534 MAGEB6P1A0A0J9YX57 407 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 DCDC2CA8MYV0 355 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 SLC25A27O95847 323 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 ZNF792Q3KQV3 632 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 TMED8Q6PL24 325 aaPredicted RBP15.46■□□□□ 0.07
SCAF11-208ENST00000546534 TMEM179Q6ZVK1 233 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 SLC44A5Q8NCS7 719 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 PPM1EQ8WY54 764 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 TOX2Q96NM4 488 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 MMP19Q99542 508 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.46■□□□□ 0.073e-7■■■■□ 21.8
SCAF11-208ENST00000546534 CRNKL1Q9BZJ0 848 aaKnown RBP15.46■□□□□ 0.07
SCAF11-208ENST00000546534 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
SCAF11-208ENST00000546534 TMX2Q9Y320 296 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 PCDHB13Q9Y5F0 798 aa15.46■□□□□ 0.07
SCAF11-208ENST00000546534 ADAMTS4O75173 837 aa15.45■□□□□ 0.06
SCAF11-208ENST00000546534 ZNF865P0CJ78 1059 aaPredicted RBP15.45■□□□□ 0.06
SCAF11-208ENST00000546534 CYP2D6P10635 497 aa15.45■□□□□ 0.06
SCAF11-208ENST00000546534 TMEM57Q8N5G2 664 aa15.45■□□□□ 0.06
SCAF11-208ENST00000546534 SMCHD1A6NHR9 2005 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 TIMP1P01033 207 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 AKR1A1P14550 325 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 PBX2P40425 430 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ACLYP53396 1101 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 KCTD2Q14681 263 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 C16orf59Q7L2K0 433 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 RIOX2Q8IUF8 465 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ATXN2LQ8WWM7 1075 aaKnown RBP15.44■□□□□ 0.06
SCAF11-208ENST00000546534 DYNLL2Q96FJ2 89 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ASB2Q96Q27 587 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 GAS2L1Q99501 681 aaPredicted RBP15.44■□□□□ 0.06
SCAF11-208ENST00000546534 TSEN34Q9BSV6 310 aaKnown RBP15.44■□□□□ 0.06
SCAF11-208ENST00000546534 PRDM12Q9H4Q4 367 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 C1orf115Q9H7X2 142 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 VCPKMTQ9H867 229 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ARHGEF10LQ9HCE6 1279 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 STARD7Q9NQZ5 370 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 TBX21Q9UL17 535 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ADAMTS5Q9UNA0 930 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 DIS3Q9Y2L1 958 aaKnown RBP15.44■□□□□ 0.06
SCAF11-208ENST00000546534 ROBO3Q96MS0 1386 aa15.44■□□□□ 0.06
SCAF11-208ENST00000546534 GRXCR1A8MXD5 290 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 WDR46O15213 610 aaKnown RBP15.43■□□□□ 0.06
SCAF11-208ENST00000546534 AKR1B1P15121 316 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 ICA1Q05084 483 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 TMEM240Q5SV17 173 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 AKNAD1Q5T1N1 836 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 NUP133Q8WUM0 1156 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 SDR42E1Q8WUS8 393 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 PBX4Q9BYU1 374 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 SH2D4AQ9H788 454 aa15.43■□□□□ 0.06
SCAF11-208ENST00000546534 DCP1AQ9NPI6 582 aaPredicted RBP15.43■□□□□ 0.06
SCAF11-208ENST00000546534 FBXO28Q9NVF7 368 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms