RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.83■□□□□ 0.13
LIMS1-215ENST00000544547 CEP104O60308 925 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 NDUFA10O95299 355 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 HIBCHQ6NVY1 386 aaPredicted RBP15.83■□□□□ 0.12
LIMS1-215ENST00000544547 APPBP2Q92624 585 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 NLRC4Q9NPP4 1024 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 NR5A1Q13285 461 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 FBF1Q8TES7 1133 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 NOX5Q96PH1 765 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 EPB41L5Q9HCM4 733 aa15.83■□□□□ 0.12
LIMS1-215ENST00000544547 SALL3Q9BXA9 1300 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 MYO1FO00160 1098 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 PPP1R12BO60237 982 aaPredicted RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 RBM43Q6ZSC3 357 aaKnown RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 MAGEB6Q8N7X4 407 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 ENGASEQ8NFI3 743 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 VWDEQ8N2E2 1590 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 ADORA1P30542 326 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 KCNJ6P48051 423 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 RRAGAQ7L523 313 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 CTNNBL1Q8WYA6 563 aaPredicted RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 RAB34Q9BZG1 259 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 PPP6R2O75170 966 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 DEXIO95424 95 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 LACTBP83111 547 aaPredicted RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 AMPD3Q01432 767 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 GKAP1Q5VSY0 366 aaPredicted RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 TC2NQ8N9U0 490 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 TRIM58Q8NG06 486 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 COG1Q8WTW3 980 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 CALML4Q96GE6 196 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 EIF4E1BA6NMX2 242 aaKnown RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 PDE4DQ08499 809 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 TRIML1Q8N9V2 468 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
LIMS1-215ENST00000544547 MYO1AQ9UBC5 1043 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 FAM184BQ9ULE4 1060 aa15.82■□□□□ 0.12
LIMS1-215ENST00000544547 RAPGEF1Q13905 1077 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 RAD9BQ6WBX8 426 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 RUFY4Q6ZNE9 571 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 ARHGEF25Q86VW2 580 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 SH2D3CQ8N5H7 860 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 UHMK1Q8TAS1 419 aaKnown RBP15.81■□□□□ 0.12
LIMS1-215ENST00000544547 CNNM2Q9H8M5 875 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 ERCC5P28715 1186 aaPredicted RBP15.81■□□□□ 0.12
LIMS1-215ENST00000544547 STOX1Q6ZVD7 989 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 TMTC2Q8N394 836 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 TSPY2A6NKD2 308 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 PRDM1O75626 825 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 SSR1P43307 286 aaKnown RBP15.81■□□□□ 0.12
LIMS1-215ENST00000544547 SPATS2Q86XZ4 545 aaKnown RBP15.81■□□□□ 0.12
LIMS1-215ENST00000544547 RPGRQ92834 1020 aaKnown RBP15.81■□□□□ 0.12
LIMS1-215ENST00000544547 TMEM87BQ96K49 555 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 PIK3C2BO00750 1634 aa15.81■□□□□ 0.12
LIMS1-215ENST00000544547 MBD4O95243 580 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 PHKG2P15735 406 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 TTC38Q5R3I4 469 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 TRIM65Q6PJ69 517 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 KSR1Q8IVT5 923 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 ESR2Q92731 530 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 SYMPKQ92797 1274 aaKnown RBP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 HYOU1Q9Y4L1 999 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 KIF28PB7ZC32 967 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 SLC8A1P32418 973 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 BIRC2Q13490 618 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 SHC4Q6S5L8 630 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 DTHD1Q6ZMT9 781 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 EPSTI1Q96J88 318 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 TRIM6Q9C030 488 aaPredicted RBP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 YY1AP1Q9H869 796 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 SPATS2LQ9NUQ6 558 aaKnown RBP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 MAST3O60307 1309 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 NR1D1P20393 614 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 IRAK1P51617 712 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 MGARPQ8TDB4 240 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 LRRC45Q96CN5 670 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 KRT12Q99456 494 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 TRIM10Q9UDY6 481 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 L1RE1Q9UN81 338 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 LRRIQ3A6PVS8 624 aaPredicted RBP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 BACH1O14867 736 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 HEXIM1O94992 359 aaKnown RBP15.8■□□□□ 0.12
LIMS1-215ENST00000544547 EPHB4P54760 987 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 OSBP2Q969R2 916 aa15.8■□□□□ 0.12
LIMS1-215ENST00000544547 ESYT3A0FGR9 886 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 USP14P54578 494 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 FMR1Q06787 632 aaKnown RBP eCLIP15.79■□□□□ 0.121e-11■■■■□ 22.7
LIMS1-215ENST00000544547 MMS19Q96T76 1030 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 ARMT1Q9H993 441 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 LDHCP07864 332 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 CYP7A1P22680 504 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 GUCY1A3Q02108 690 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 PDE4BQ07343 736 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 NFU1Q9UMS0 254 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 PCDHB6Q9Y5E3 794 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 MAP2P11137 1827 aaKnown RBP15.79■□□□□ 0.12
LIMS1-215ENST00000544547 BICDL2A1A5D9 508 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms