RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	WNK4	Q96J92	1243 aa		13.85	□□□□□ -0.19
DDB1-223	ENST00000543658	TMX3	Q96JJ7	454 aa		13.85	□□□□□ -0.19
DDB1-223	ENST00000543658	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.85	□□□□□ -0.19
DDB1-223	ENST00000543658	NID2	Q14112	1375 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	CXCL11	O14625	94 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	WDR46	O15213	610 aa	Known RBP	13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	PFKFB2	O60825	505 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	NDUFB10	O96000	172 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	BMP3	P12645	472 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	TROAP	Q12815	778 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	SIAH1	Q8IUQ4	282 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	CNKSR2	Q8WXI2	1034 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	GTF3C6	Q969F1	213 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	GMCL1	Q96IK5	515 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	CREBZF	Q9NS37	354 aa		13.84	□□□□□ -0.19
DDB1-223	ENST00000543658	IRF6	O14896	467 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	LARGE1	O95461	756 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	GTF2A2	P52657	109 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	AKAP17A	Q02040	695 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	MKRN3	Q13064	507 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	FAM83B	Q5T0W9	1011 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	FASTKD5	Q7L8L6	764 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	CCDC102A	Q96A19	550 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	HHIPL1	Q96JK4	782 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	C12orf42	Q96LP6	360 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	LZTS2	Q9BRK4	669 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	TANGO6	Q9C0B7	1094 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	GPCPD1	Q9NPB8	672 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	KCNH4	Q9UQ05	1017 aa		13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658	COL11A1	P12107	1806 aa	Predicted RBP	13.83	□□□□□ -0.2
DDB1-223	ENST00000543658		A0A0G2JLL6	359 aa	Predicted RBP	13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	GOLGA8H	P0CJ92	632 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	CETP	P11597	493 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	VCAM1	P19320	739 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	STAT2	P52630	851 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	ZNF543	Q08ER8	600 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	SCRN1	Q12765	414 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	GRM1	Q13255	1194 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	SH3D19	Q5HYK7	790 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	SPRYD7	Q5W111	196 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	KCTD1	Q719H9	257 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	FAM160B2	Q86V87	743 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	RASAL3	Q86YV0	1011 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	TRIM22	Q8IYM9	498 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	NECAB1	Q8N987	351 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	NCOA5	Q9HCD5	579 aa	Known RBP	13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	MAD2L2	Q9UI95	211 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	HPS5	Q9UPZ3	1129 aa		13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.82	□□□□□ -0.2
DDB1-223	ENST00000543658	CCL15-CCL14	A0A0B4J2E2	113 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	TMEM232	C9JQI7	657 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	KLRF2	D3W0D1	207 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	SLC10A3	P09131	477 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	SNHG28	P0DPA3	235 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	CCL15	Q16663	113 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	TMTC3	Q6ZXV5	915 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	CHURC1	Q8WUH1	139 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	NUP88	Q99567	741 aa	Predicted RBP	13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	EMILIN3	Q9NT22	766 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	FEM1B	Q9UK73	627 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	KIF3A	Q9Y496	699 aa		13.81	□□□□□ -0.2
DDB1-223	ENST00000543658	PALM3	A6NDB9	673 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	MANSC4	A6NHS7	340 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	FLOT1	O75955	427 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	CDC27	P30260	824 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	ADD1	P35611	737 aa	Known RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	GJA5	P36382	358 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	IRX3	P78415	501 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	SSRP1	Q08945	709 aa	Known RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	DEFB115	Q30KQ5	88 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	RASGRP2	Q7LDG7	609 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	STAG2	Q8N3U4	1231 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	FAM184A	Q8NB25	1140 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	LLPH	Q9BRT6	129 aa	Known RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	RBM27	Q9P2N5	1060 aa	Known RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	SEC63	Q9UGP8	760 aa	Known RBP	13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	PNMA3	Q9UL41	463 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	AGTPBP1	Q9UPW5	1226 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	SMC3	Q9UQE7	1217 aa		13.8	□□□□□ -0.2
DDB1-223	ENST00000543658	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L15	C9J2P7	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L13	C9JLJ4	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L11	C9JVI0	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L18	D6R9N7	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L22	D6RA61	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L17	D6RBQ6	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L19	D6RCP7	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L20	D6RJB6	530 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	PLEKHA8P1	O95397	391 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	IFNAR1	P17181	557 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	OSBP	P22059	807 aa		13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	HMGN5	P82970	282 aa	Known RBP	13.79	□□□□□ -0.2
DDB1-223	ENST00000543658	USP17L24	Q0WX57	530 aa		13.79	□□□□□ -0.2

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