RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 PXYLP1Q8TE99 480 aa8.64□□□□□ -1.03
LMO3-220ENST00000539232 CABP5Q9NP86 173 aa8.64□□□□□ -1.03
LMO3-220ENST00000539232 GINM1Q9NU53 330 aa8.64□□□□□ -1.03
LMO3-220ENST00000539232 ARPP21Q9UBL0 812 aaPredicted RBP8.64□□□□□ -1.03
LMO3-220ENST00000539232 MORF4L1Q9UBU8 362 aa8.64□□□□□ -1.03
LMO3-220ENST00000539232 SWAP70Q9UH65 585 aa8.64□□□□□ -1.03
LMO3-220ENST00000539232 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.64□□□□□ -1.03
LMO3-220ENST00000539232 ROBO3Q96MS0 1386 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L15C9J2P7 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L13C9JLJ4 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L11C9JVI0 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L18D6R9N7 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L22D6RA61 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L17D6RBQ6 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L19D6RCP7 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L20D6RJB6 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 TNPO2O14787 897 aaKnown RBP8.63□□□□□ -1.03
LMO3-220ENST00000539232 ADCY3O60266 1144 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 FGAP02671 866 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 MRE11P49959 708 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 FCGRTP55899 365 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 HAND2P61296 217 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 PPARAQ07869 468 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 USP17L24Q0WX57 530 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 FAM110CQ1W6H9 321 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 SAMD1Q6SPF0 538 aaPredicted RBP8.63□□□□□ -1.03
LMO3-220ENST00000539232 TBC1D10CQ8IV04 446 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 ATG4CQ96DT6 458 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 TBC1D2Q9BYX2 928 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 TTYH1Q9H313 450 aaPredicted RBP8.63□□□□□ -1.03
LMO3-220ENST00000539232 C11orf49Q9H6J7 331 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 IL17RBQ9NRM6 502 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 ZBTB47Q9UFB7 747 aaPredicted RBP8.63□□□□□ -1.03
LMO3-220ENST00000539232 TMX2Q9Y320 296 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 TAF6LQ9Y6J9 622 aa8.63□□□□□ -1.03
LMO3-220ENST00000539232 DDX60LQ5H9U9 1706 aaKnown RBP8.63□□□□□ -1.03
LMO3-220ENST00000539232 DOCK2Q92608 1830 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 NDUFB10O96000 172 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 HSPD1P10809 573 aaKnown RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 TAL1P17542 331 aaPredicted RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 GNAT2P19087 354 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 GCLCP48506 637 aaPredicted RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 SMAD3P84022 425 aaKnown RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 COL9A3Q14050 684 aaPredicted RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 CCL14Q16627 93 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 MCMDC2Q4G0Z9 681 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 FAM83BQ5T0W9 1011 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 CWC27Q6UX04 472 aaKnown RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 LRRC47Q8N1G4 583 aaKnown RBP8.62□□□□□ -1.03
LMO3-220ENST00000539232 IL27Q8NEV9 243 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 GPRC5AQ8NFJ5 357 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 USP6NLQ92738 828 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 CEP95Q96GE4 821 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 CCDC17Q96LX7 622 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 TANGO6Q9C0B7 1094 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 NAPBQ9H115 298 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 VCPKMTQ9H867 229 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 KANSL2Q9H9L4 492 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 MKNK2Q9HBH9 465 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 HELLSQ9NRZ9 838 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 THEGQ9P2T0 379 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 CLIP2Q9UDT6 1046 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 PNMA3Q9UL41 463 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 TAOK2Q9UL54 1235 aa8.62□□□□□ -1.03
LMO3-220ENST00000539232 CDH23Q9H251 3354 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 CYP2B6P20813 491 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 SNAP25P60880 206 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 ERVK-9P63128 1117 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 ERVK-24P63145 666 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 MRPS5P82675 430 aaKnown RBP8.61□□□□□ -1.03
LMO3-220ENST00000539232 TFAP4Q01664 338 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 ALX1Q15699 326 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 TMEM31Q5JXX7 168 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 MORN1Q5T089 497 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 TTC22Q5TAA0 569 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 DDRGK1Q96HY6 314 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 LBHD1Q9BQE6 289 aaPredicted RBP8.61□□□□□ -1.03
LMO3-220ENST00000539232 MOV10L1Q9BXT6 1211 aaKnown RBP8.61□□□□□ -1.03
LMO3-220ENST00000539232 MTMR4Q9NYA4 1195 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 FLRT1Q9NZU1 646 aa8.61□□□□□ -1.03
LMO3-220ENST00000539232 NEDD4P46934 1319 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 CCDC171Q6TFL3 1326 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 F5H6K3 240 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 RAD21O60216 631 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 FLOT1O75955 427 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 FGRP09769 529 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 DSG3P32926 999 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 USP14P54578 494 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 PTH1RQ03431 593 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 KLRC3Q07444 240 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 PABPC4Q13310 644 aaKnown RBP eCLIP8.6□□□□□ -1.03
LMO3-220ENST00000539232 IRF5Q13568 498 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 COG2Q14746 738 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 TMEM132BQ14DG7 1078 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 LBX2Q6XYB7 198 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 GPR142Q7Z601 462 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 REPS2Q8NFH8 660 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 NEDD1Q8NHV4 660 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 TRIB2Q92519 343 aa8.6□□□□□ -1.03
LMO3-220ENST00000539232 NACAP1Q9BZK3 213 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms