RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MKL1Q969V6 931 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 ATG4CQ96DT6 458 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 CEP95Q96GE4 821 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 FAM227BQ96M60 508 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 MOV10L1Q9BXT6 1211 aaKnown RBP13.74□□□□□ -0.21
RTN3-209ENST00000538995 CRISPLD2Q9H0B8 497 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.74□□□□□ -0.21
RTN3-209ENST00000538995 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 PPP1R9AQ9ULJ8 1098 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 ADAMTS5Q9UNA0 930 aa13.74□□□□□ -0.21
RTN3-209ENST00000538995 CCDC171Q6TFL3 1326 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 RLFQ13129 1914 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 F5H6K3 240 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 HIP1O00291 1037 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 STRNO43815 780 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 COPB2P35606 906 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 KLRC3Q07444 240 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 NMIQ13287 307 aaPredicted RBP13.73□□□□□ -0.21
RTN3-209ENST00000538995 FAM83BQ5T0W9 1011 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 VPS53Q5VIR6 699 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 WDR78Q5VTH9 848 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 ABRAQ8N0Z2 381 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 GMCL1P1Q8NEA9 526 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 RILPL2Q969X0 211 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 DEFB118Q96PH6 123 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 MROH8Q9H579 483 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 HMX1Q9NP08 348 aaPredicted RBP13.73□□□□□ -0.21
RTN3-209ENST00000538995 ZNF236Q9UL36 1845 aa13.73□□□□□ -0.21
RTN3-209ENST00000538995 ORC4O43929 436 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 FARP2O94887 1054 aaPredicted RBP13.72□□□□□ -0.21
RTN3-209ENST00000538995 SLC25A27O95847 323 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 NDUFB10O96000 172 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 FGRP09769 529 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 HSPD1P10809 573 aaKnown RBP13.72□□□□□ -0.21
RTN3-209ENST00000538995 PRKAR2AP13861 404 aaKnown RBP13.72□□□□□ -0.21
RTN3-209ENST00000538995 ERCC3P19447 782 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 SDSP20132 328 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 ZNF589Q86UQ0 364 aaPredicted RBP13.72□□□□□ -0.21
RTN3-209ENST00000538995 CLIP2Q9UDT6 1046 aa13.72□□□□□ -0.21
RTN3-209ENST00000538995 TSPY2A6NKD2 308 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 VWA5AO00534 786 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 RAD21O60216 631 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 FGAP02671 866 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 PCP11498 1178 aaKnown RBP13.71□□□□□ -0.21
RTN3-209ENST00000538995 TFAP4Q01664 338 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 TRIM32Q13049 653 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 TMEM132BQ14DG7 1078 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 MFSD14CQ5VZR4 134 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 ANKLE1Q8NAG6 615 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 SLF1Q9BQI6 1058 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 DIAPH3Q9NSV4 1193 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 FBXO28Q9NVF7 368 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 SLC5A4Q9NY91 659 aa13.71□□□□□ -0.21
RTN3-209ENST00000538995 TFRCP02786 760 aaKnown RBP13.7□□□□□ -0.22
RTN3-209ENST00000538995 ADORA2AP29274 412 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 NT5C2P49902 561 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 CTDSPL2Q05D32 466 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 CACNB2Q08289 660 aaPredicted RBP13.7□□□□□ -0.22
RTN3-209ENST00000538995 PLS1Q14651 629 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 CCL14Q16627 93 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 FAM47AQ5JRC9 791 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 OLFML2BQ68BL8 750 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 NCAPG2Q86XI2 1143 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 RIOX2Q8IUF8 465 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 LRRC47Q8N1G4 583 aaKnown RBP13.7□□□□□ -0.22
RTN3-209ENST00000538995 PRPF38AQ8NAV1 312 aaKnown RBP13.7□□□□□ -0.22
RTN3-209ENST00000538995 REPS2Q8NFH8 660 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 HTATIP2Q9BUP3 242 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 FEM1BQ9UK73 627 aa13.7□□□□□ -0.22
RTN3-209ENST00000538995 ZNF214Q9UL59 606 aaPredicted RBP13.7□□□□□ -0.22
RTN3-209ENST00000538995 PARP14Q460N5 1801 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 ATP2A1O14983 1001 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 IGHA2P01877 340 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 STAT3P40763 770 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 NOVP48745 357 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 GMCL1Q96IK5 515 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 NUP88Q99567 741 aaPredicted RBP13.69□□□□□ -0.22
RTN3-209ENST00000538995 TEX13BQ9BXU2 312 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 OGDHLQ9ULD0 1010 aa13.69□□□□□ -0.22
RTN3-209ENST00000538995 RANBP6O60518 1105 aaKnown RBP13.68□□□□□ -0.22
RTN3-209ENST00000538995 FDX1P10109 184 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 FCER1AP12319 257 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 PDE4AP27815 886 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 IRX6P78412 446 aaPredicted RBP13.68□□□□□ -0.22
RTN3-209ENST00000538995 SLFN13Q68D06 897 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 SAMD1Q6SPF0 538 aaPredicted RBP13.68□□□□□ -0.22
RTN3-209ENST00000538995 DPP9Q86TI2 863 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 NPLOC4Q8TAT6 608 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 STAG1Q8WVM7 1258 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 RNF41Q9H4P4 317 aaPredicted RBP13.68□□□□□ -0.22
RTN3-209ENST00000538995 FLRT1Q9NZU1 646 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 STX8Q9UNK0 236 aa13.68□□□□□ -0.22
RTN3-209ENST00000538995 MSCO60682 206 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 PLA2G6O60733 806 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 ZBED4O75132 1171 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 BMP3P12645 472 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 STAT2P52630 851 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 OAZ1P54368 228 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 TTC22Q5TAA0 569 aa13.67□□□□□ -0.22
RTN3-209ENST00000538995 CWC27Q6UX04 472 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms