RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TMED1Q13445 227 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 PNOCQ13519 176 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 NUGGCQ68CJ6 796 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 KCTD16Q68DU8 428 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 DPY19L2Q6NUT2 758 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 GBP7Q8N8V2 638 aaPredicted RBP13.83□□□□□ -0.2
USP3-203ENST00000538686 TSEN2Q8NCE0 465 aaKnown RBP13.83□□□□□ -0.2
USP3-203ENST00000538686 LZICQ8WZA0 190 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 PPANQ9NQ55 473 aaKnown RBP13.83□□□□□ -0.2
USP3-203ENST00000538686 STIM2Q9P246 746 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 G3BP2Q9UN86 482 aaKnown RBP13.83□□□□□ -0.2
USP3-203ENST00000538686 SLC12A4Q9UP95 1085 aa13.83□□□□□ -0.2
USP3-203ENST00000538686 ATP7AQ04656 1500 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 CCT8L1PA6NM43 557 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 CTDNEP1O95476 244 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 ATP1A1P05023 1023 aaKnown RBP13.82□□□□□ -0.2
USP3-203ENST00000538686 DEUP1Q05D60 604 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 FLIIQ13045 1269 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 SLC39A14Q15043 492 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 SESTD1Q86VW0 696 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 AGAP11Q8TF27 550 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 TRAPPC9Q96Q05 1148 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 MAF1Q9H063 256 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 ZWILCHQ9H900 591 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 GUCA1BQ9UMX6 200 aa13.82□□□□□ -0.2
USP3-203ENST00000538686 N4BP3O15049 544 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 KRT86O43790 486 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 TRIM37O94972 964 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 PENKP01210 267 aaPredicted RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 WASHC4Q2M389 1173 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 NT5DC1Q5TFE4 455 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 LRIG3Q6UXM1 1119 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 RINLQ6ZS11 566 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 ARMCX6Q7L4S7 300 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 CAPZA3Q96KX2 299 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 SLX1AQ9BQ83 275 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 TRIM7Q9C029 511 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 USP44Q9H0E7 712 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 RMI1Q9H9A7 625 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 ABHD10Q9NUJ1 306 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 DNAAF2Q9NVR5 837 aaKnown RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 CEP131Q9UPN4 1083 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 PHF24Q9UPV7 400 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 GMEB1Q9Y692 573 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 FLOT1O75955 427 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 KRT14P02533 472 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 CSB-PGBD3P0DP91 1061 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 CASP14P31944 242 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 PSMC4P43686 418 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 PLCD1P51178 756 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 SH3BGRP55822 239 aaPredicted RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 KRT83P78385 493 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 RASA3Q14644 834 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 SPRED3Q2MJR0 410 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 PPP1R15BQ5SWA1 713 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 LCA5Q86VQ0 697 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 IFT20Q8IY31 132 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 NAF1Q96HR8 494 aaKnown RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 FAM227BQ96M60 508 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 IQSEC3Q9UPP2 1182 aaPredicted RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 PCDHA5Q9Y5H7 936 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 EPN1Q9Y6I3 576 aaPredicted RBP13.81□□□□□ -0.2
USP3-203ENST00000538686 MROH7-TTC4A0A0A0MT08 1334 aa13.81□□□□□ -0.2
USP3-203ENST00000538686 ZNF233A6NK53 670 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 PRC1O43663 620 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 CLTAP09496 248 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 PRLRP16471 622 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ATP2A2P16615 1042 aaKnown RBP13.8□□□□□ -0.2
USP3-203ENST00000538686 ERVK-24P63145 666 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 PDE4BQ07343 736 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 USP4Q13107 963 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 BIRC3Q13489 604 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ITIH4Q14624 930 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ANKRD20A2Q5SQ80 823 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ANKRD20A1Q5TYW2 823 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ANKRD20A3Q5VUR7 823 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 RESP18Q5W5W9 173 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 METTL16Q86W50 562 aaKnown RBP13.8□□□□□ -0.2
USP3-203ENST00000538686 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP3-203ENST00000538686 AIDAQ96BJ3 306 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ZNF274Q96GC6 653 aaPredicted RBP13.8□□□□□ -0.2
USP3-203ENST00000538686 TAF1DQ9H5J8 278 aaPredicted RBP13.8□□□□□ -0.2
USP3-203ENST00000538686 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP3-203ENST00000538686 HDAC6Q9UBN7 1215 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 CTNNAL1Q9UBT7 734 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 ADD3Q9UEY8 706 aaKnown RBP13.8□□□□□ -0.2
USP3-203ENST00000538686 TAOK2Q9UL54 1235 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 C2CD2Q9Y426 696 aa13.8□□□□□ -0.2
USP3-203ENST00000538686 E7ENQ6 273 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 NDUFA10O95299 355 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 OATP04181 439 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 GYPCP04921 128 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 FOSBP53539 338 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 C2orf54Q08AI8 447 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 COL9A3Q14050 684 aaPredicted RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 TAF11Q15544 211 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 CCDC129Q6ZRS4 1044 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 PNMA8AQ86V59 439 aaPredicted RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 CCDC197Q8NCU1 140 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 CCDC43Q96MW1 224 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms