RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 P4HA1P13674 534 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 HIBADHP31937 336 aaKnown RBP11.74□□□□□ -0.53
CLIP1-209ENST00000537178 WHAMMP3Q1A5X7 153 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 FAM135BQ49AJ0 1406 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 MYCT1Q8N699 235 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 RBM17Q96I25 401 aaKnown RBP11.74□□□□□ -0.53
CLIP1-209ENST00000537178 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.74□□□□□ -0.53
CLIP1-209ENST00000537178 TRPC6Q9Y210 931 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 HIP1RO75146 1068 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 CARD10Q9BWT7 1032 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 CBX8Q9HC52 389 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 AMFRQ9UKV5 643 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 FAN1Q9Y2M0 1017 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 ARHGEF40Q8TER5 1519 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 RICTORQ6R327 1708 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 PDE1CQ14123 709 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 MTHFSDQ2M296 383 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SIRT2Q8IXJ6 389 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 HACE1Q8IYU2 909 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 TEKT1Q969V4 418 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 DDX27Q96GQ7 796 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SLF1Q9BQI6 1058 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 IFIH1Q9BYX4 1025 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 MON2Q7Z3U7 1717 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 GNA14O95837 355 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SLC1A4P43007 532 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 CEBPAP49715 358 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 PUM3Q15397 648 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 MYRIPQ8NFW9 859 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 BICC1Q9H694 974 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SAP30BPQ9UHR5 308 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 FLT4P35916 1363 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 ZBTB24O43167 697 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 POSTNQ15063 836 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 PRR16Q569H4 304 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 WWC3Q9ULE0 1092 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 TTLL3Q9Y4R7 772 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SLC27A2O14975 620 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 RABEP2Q9H5N1 569 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 MYCLP12524 364 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 OAS2P29728 719 aaKnown RBP11.73□□□□□ -0.53
CLIP1-209ENST00000537178 PHBP35232 272 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 BRD3Q15059 726 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 DBN1Q16643 649 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 PSMB7Q99436 277 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 NT5C3AQ9H0P0 336 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 Q9H521 79 aa11.73□□□□□ -0.53
CLIP1-209ENST00000537178 SH3TC1Q8TE82 1336 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 GCNT3O95395 438 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 CPA1P15085 419 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 FBLN1P23142 703 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 STAT1P42224 750 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 NBPF14Q5TI25 921 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 PALM2Q8IXS6 379 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 BAG5Q9UL15 447 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 SAR1BQ9Y6B6 198 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 AKAP12Q02952 1782 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 KRT19P08727 400 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 KIF11P52732 1056 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 LONRF2Q1L5Z9 754 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 TRIM58Q8NG06 486 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 MICAL1Q8TDZ2 1067 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 MRPL44Q9H9J2 332 aaKnown RBP11.72□□□□□ -0.53
CLIP1-209ENST00000537178 ANKFY1Q9P2R3 1169 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 JAG2Q9Y219 1238 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 TOM1O60784 492 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 ZBED4O75132 1171 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 PRPF6O94906 941 aaKnown RBP11.72□□□□□ -0.53
CLIP1-209ENST00000537178 MUM1Q2TAK8 710 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 CCDC93Q567U6 631 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 DYMQ7RTS9 669 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 SPATS2Q86XZ4 545 aaKnown RBP11.72□□□□□ -0.53
CLIP1-209ENST00000537178 ANKRD42Q8N9B4 389 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 NELFBQ8WX92 580 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 RSAD2Q8WXG1 361 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 MAP3K5Q99683 1374 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 ARHGAP42A6NI28 874 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 PLCB4Q15147 1175 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 DIXDC1Q155Q3 683 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 CALCRLQ16602 461 aa11.72□□□□□ -0.53
CLIP1-209ENST00000537178 RNF168Q8IYW5 571 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-209ENST00000537178 NRXN3Q9Y4C0 1643 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 M0QZ92 97 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 GPAA1O43292 621 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 UFL1O94874 794 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 IFNB1P01574 187 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 KRT3P12035 628 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 CTNNA1P35221 906 aaKnown RBP11.71□□□□□ -0.53
CLIP1-209ENST00000537178 TIMM10P62072 90 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 KRT40Q6A162 431 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 CABP7Q86V35 215 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 HAUS1Q96CS2 278 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 ARMT1Q9H993 441 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 MYO1AQ9UBC5 1043 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 AOX1Q06278 1338 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 MTX1Q13505 466 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 TNNI3KQ59H18 835 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 BSPRYQ5W0U4 402 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 RRAGAQ7L523 313 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 CNBD1Q8NA66 436 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms