RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 DNAJA2O60884 412 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 CHMP4BP1P59074 171 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 SRSF3P84103 164 aaKnown RBP8.32□□□□□ -1.08
SYNE1-232ENST00000535081 DAB2P98082 770 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 WAPLQ7Z5K2 1190 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 VWCEQ96DN2 955 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 MAP6Q96JE9 813 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 RHOVQ96L33 236 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 RTEL1Q9NZ71 1219 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 ZMYM5Q9UJ78 669 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 USP31Q70CQ4 1352 aa8.32□□□□□ -1.08
SYNE1-232ENST00000535081 ANKRD33BA6NCL7 494 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 NRDCO43847 1150 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 CTSHP09668 335 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 SYN1P17600 705 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 KIR2DL1P43626 348 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-232ENST00000535081 KIR2DL2P43627 348 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-232ENST00000535081 FOXP3Q9BZS1 431 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 CRTAC1Q9NQ79 661 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 SIRT5Q9NXA8 310 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 JAG2Q9Y219 1238 aa8.31□□□□□ -1.08
SYNE1-232ENST00000535081 GBP1P32455 592 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 EPHB3P54753 998 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 SLC14A2Q15849 920 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 CEP128Q6ZU80 1094 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 USHBP1Q8N6Y0 703 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 DAGLBQ8NCG7 672 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 PANK1Q8TE04 598 aa8.3□□□□□ -1.08
SYNE1-232ENST00000535081 RNF4P78317 190 aa8.29□□□□□ -1.08
SYNE1-232ENST00000535081 ERICH6Q7L0X2 663 aa8.29□□□□□ -1.08
SYNE1-232ENST00000535081 DACT3Q96B18 629 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-232ENST00000535081 TCTN2Q96GX1 697 aa8.29□□□□□ -1.08
SYNE1-232ENST00000535081 TCFL5Q9UL49 500 aa8.29□□□□□ -1.08
SYNE1-232ENST00000535081 TMEM82A0PJX8 343 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 SASH1O94885 1247 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 VIPR1P32241 457 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 AFF3P51826 1226 aaKnown RBP8.28□□□□□ -1.08
SYNE1-232ENST00000535081 PCBP3P57721 371 aaKnown RBP8.28□□□□□ -1.08
SYNE1-232ENST00000535081 MPP2Q14168 576 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 REC114Q7Z4M0 266 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 HHIPL1Q96JK4 782 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 TMEM74Q96NL1 305 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 XYLT2Q9H1B5 865 aa8.28□□□□□ -1.08
SYNE1-232ENST00000535081 SSU72P8A0A1W2PR75 194 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 RGS13O14921 159 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 N4BP3O15049 544 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 GBP2P32456 591 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-232ENST00000535081 FAM160A1Q05DH4 1040 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 SNAP47Q5SQN1 464 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 TMC4Q7Z404 712 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 ZNF655Q8N720 491 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-232ENST00000535081 CXorf38Q8TB03 319 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 CRELD1Q96HD1 420 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 CNTD2Q9H8S5 307 aa8.27□□□□□ -1.09
SYNE1-232ENST00000535081 SLC22A31A6NKX4 558 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 UBOX5O94941 541 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 PNLIPP16233 465 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 SDHBP21912 280 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 XPCQ01831 940 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-232ENST00000535081 OLFML2BQ68BL8 750 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 TMC3Q7Z5M5 1100 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 RELL1Q8IUW5 271 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 LINC00116Q8NCU8 138 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 FAM161BQ96MY7 647 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 ADAMTS20P59510 1910 aa8.26□□□□□ -1.09
SYNE1-232ENST00000535081 OTOL1A6NHN0 477 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-232ENST00000535081 PATL2C9JE40 543 aaKnown RBP8.25□□□□□ -1.09
SYNE1-232ENST00000535081 FKTNO75072 461 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 YBX1P67809 324 aaKnown RBP8.25□□□□□ -1.09
SYNE1-232ENST00000535081 MLECQ14165 292 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 BBS9Q3SYG4 887 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 GOLM1Q8NBJ4 401 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 FBXO27Q8NI29 283 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 RSRP1Q9BUV0 290 aa8.25□□□□□ -1.09
SYNE1-232ENST00000535081 EPB41L4AQ9HCS5 686 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-232ENST00000535081 IRS4O14654 1257 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-232ENST00000535081 SYPP08247 313 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 RAG1P15918 1043 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 ERVFRD-1P60508 538 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 PWP1Q13610 501 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 NBPF9Q3BBW0 867 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 ARSHQ5FYA8 562 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 ZPBP2Q6X784 338 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 PLCD4Q9BRC7 762 aa8.24□□□□□ -1.09
SYNE1-232ENST00000535081 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.24□□□□□ -1.09
SYNE1-232ENST00000535081 ABLIM1O14639 778 aa8.23□□□□□ -1.09
SYNE1-232ENST00000535081 CDR1P51861 262 aa8.23□□□□□ -1.09
SYNE1-232ENST00000535081 RTP1P59025 263 aa8.23□□□□□ -1.09
SYNE1-232ENST00000535081 SNW1Q13573 536 aaKnown RBP8.23□□□□□ -1.09
SYNE1-232ENST00000535081 SKOR2Q2VWA4 1001 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-232ENST00000535081 NBPF12Q5TAG4 269 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-232ENST00000535081 FAM196AQ6ZSG2 479 aa8.23□□□□□ -1.09
SYNE1-232ENST00000535081 MZB1Q8WU39 189 aa8.23□□□□□ -1.09
SYNE1-232ENST00000535081 FCRL2Q96LA5 508 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-232ENST00000535081 PRAMEF1O95521 474 aa8.22□□□□□ -1.09
SYNE1-232ENST00000535081 GARTP22102 1010 aa8.22□□□□□ -1.09
SYNE1-232ENST00000535081 SP8Q8IXZ3 490 aa8.22□□□□□ -1.09
SYNE1-232ENST00000535081 FEZF2Q8TBJ5 459 aa8.22□□□□□ -1.09
SYNE1-232ENST00000535081 TAF6LQ9Y6J9 622 aa8.22□□□□□ -1.09
SYNE1-232ENST00000535081 MINDY4BA8MYZ0 360 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms