RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 ZNF296Q8WUU4 475 aaPredicted RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 TMEM87BQ96K49 555 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 MTA3Q9BTC8 594 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 C22orf23Q9BZE7 217 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 LY9Q9HBG7 655 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 ZCCHC17Q9NP64 241 aaKnown RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 SLC45A1Q9Y2W3 748 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 RLFQ13129 1914 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 WDR19Q8NEZ3 1342 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 USP17L15C9J2P7 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L13C9JLJ4 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L11C9JVI0 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L18D6R9N7 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L22D6RA61 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L17D6RBQ6 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L19D6RCP7 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L20D6RJB6 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 ALDH1A1P00352 501 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 CYP2C8P10632 490 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 OSBPP22059 807 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 RPS6KB1P23443 525 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 USP17L24Q0WX57 530 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 PABPC4Q13310 644 aaKnown RBP eCLIP16.42■□□□□ 0.22
USF1-209ENST00000529476 CATSPERGQ6ZRH7 1159 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 UPF3BQ9BZI7 483 aaKnown RBP16.42■□□□□ 0.22
USF1-209ENST00000529476 TM6SF1Q9BZW5 370 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 TANGO6Q9C0B7 1094 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 ASCC2Q9H1I8 757 aaPredicted RBP16.42■□□□□ 0.22
USF1-209ENST00000529476 UPF2Q9HAU5 1272 aaKnown RBP16.42■□□□□ 0.22
USF1-209ENST00000529476 ZSWIM6Q9HCJ5 1215 aa16.42■□□□□ 0.22
USF1-209ENST00000529476 TBC1D8O95759 1140 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 IRX3P78415 501 aaPredicted RBP16.41■□□□□ 0.22
USF1-209ENST00000529476 CRHR2Q13324 411 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 RUFY3Q7L099 469 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 IL17RAQ96F46 866 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 GMCL1Q96IK5 515 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 R3HDMLQ9H3Y0 253 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 ISY1Q9ULR0 285 aaKnown RBP16.41■□□□□ 0.22
USF1-209ENST00000529476 CYP46A1Q9Y6A2 500 aa16.41■□□□□ 0.22
USF1-209ENST00000529476 PDHBP11177 359 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 BMP3P12645 472 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 SLC1A4P43007 532 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 RBM25P49756 843 aaKnown RBP16.4■□□□□ 0.22
USF1-209ENST00000529476 CCDC96Q2M329 555 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 NFXL1Q6ZNB6 911 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 Q6ZUG5 572 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 DCAF4Q8WV16 495 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 PARK7Q99497 189 aaKnown RBP16.4■□□□□ 0.22
USF1-209ENST00000529476 P2RX7Q99572 595 aaKnown RBP16.4■□□□□ 0.22
USF1-209ENST00000529476 ZFYVE28Q9HCC9 887 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 FBXO28Q9NVF7 368 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 PNMA3Q9UL41 463 aa16.4■□□□□ 0.22
USF1-209ENST00000529476 FRMPD2Q68DX3 1309 aaPredicted RBP16.4■□□□□ 0.22
USF1-209ENST00000529476 FLOT1O75955 427 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 SNHG28P0DPA3 235 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 LIFRP42702 1097 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 FGD1P98174 961 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 SAMD1Q6SPF0 538 aaPredicted RBP16.39■□□□□ 0.21
USF1-209ENST00000529476 KCTD1Q719H9 257 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 TMTC2Q8N394 836 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 SMCR8Q8TEV9 937 aaPredicted RBP16.39■□□□□ 0.21
USF1-209ENST00000529476 MYL10Q9BUA6 226 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 ADGRA2Q96PE1 1338 aa16.39■□□□□ 0.21
USF1-209ENST00000529476 CCDC69A6NI79 296 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 TMEM232C9JQI7 657 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 GOLGA8HP0CJ92 632 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 FXR1P51114 621 aaKnown RBP eCLIP16.38■□□□□ 0.21
USF1-209ENST00000529476 HERVK_113P62684 666 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 ZNF543Q08ER8 600 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 COG2Q14746 738 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 TTBK2Q6IQ55 1244 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 FBXO46Q6PJ61 603 aaPredicted RBP16.38■□□□□ 0.21
USF1-209ENST00000529476 POTEEQ6S8J3 1075 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 CATIPQ7Z7H3 387 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 SGMS1Q86VZ5 419 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 ZNF654Q8IZM8 581 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 TBC1D32Q96NH3 1257 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 KIF2CQ99661 725 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 CFHR5Q9BXR6 569 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 GPCPD1Q9NPB8 672 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 PDRG1Q9NUG6 133 aa16.38■□□□□ 0.21
USF1-209ENST00000529476 COL11A1P12107 1806 aaPredicted RBP16.38■□□□□ 0.21
USF1-209ENST00000529476 A0A0G2JMZ2 1700 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 SPDYE16A6NNV3 312 aaPredicted RBP16.37■□□□□ 0.21
USF1-209ENST00000529476 TLR2O60603 784 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 DSG3P32926 999 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 TROAPQ12815 778 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 RAB11FIP4Q86YS3 637 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 NUP133Q8WUM0 1156 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 BRF1Q92994 677 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 ATG4CQ96DT6 458 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 SLF1Q9BQI6 1058 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 CPA4Q9UI42 421 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 FEM1BQ9UK73 627 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 BRPF3Q9ULD4 1205 aa16.37■□□□□ 0.21
USF1-209ENST00000529476 GPR25O00155 361 aa16.36■□□□□ 0.21
USF1-209ENST00000529476 PEX10O60683 326 aa16.36■□□□□ 0.21
USF1-209ENST00000529476 DDAH1O94760 285 aa16.36■□□□□ 0.21
USF1-209ENST00000529476 PARP1P09874 1014 aaKnown RBP16.36■□□□□ 0.21
USF1-209ENST00000529476 SLC16A2P36021 539 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms