RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 LETMD1Q6P1Q0 360 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 RBBP8NLQ8NC74 664 aaPredicted RBP4.7□□□□□ -1.66
CD44-229ENST00000528672 NETO1Q8TDF5 533 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 Q96M66 194 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 SRPK1Q96SB4 655 aaKnown RBP4.7□□□□□ -1.66
CD44-229ENST00000528672 CRBNQ96SW2 442 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 ACTR10Q9NZ32 417 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 APEX2Q9UBZ4 518 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 PFDN2Q9UHV9 154 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 ANGEL1Q9UNK9 670 aaKnown RBP4.7□□□□□ -1.66
CD44-229ENST00000528672 SNX11Q9Y5W9 270 aa4.7□□□□□ -1.66
CD44-229ENST00000528672 MEIS1O00470 390 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 TNFRSF10CO14798 259 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 ADAMTS4O75173 837 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 CLCN7P51798 805 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 RASA3Q14644 834 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 IFI16Q16666 785 aaKnown RBP4.69□□□□□ -1.66
CD44-229ENST00000528672 KIAA1211LQ6NV74 962 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 TMC3Q7Z5M5 1100 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 LILRB2Q8N423 598 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 AGBL5Q8NDL9 886 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 VWCEQ96DN2 955 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 SNTG2Q9NY99 539 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 CCDC39Q9UFE4 941 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 VAV3Q9UKW4 847 aa4.69□□□□□ -1.66
CD44-229ENST00000528672 TMEM265A0A087WTH1 108 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 RGS13O14921 159 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 CBFA2T2O43439 604 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 DDAH1O94760 285 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 CEACAM5P06731 702 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 ZNF865P0CJ78 1059 aaPredicted RBP4.68□□□□□ -1.66
CD44-229ENST00000528672 GBP1P32455 592 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 GRIA2P42262 883 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 DDR2Q16832 855 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 SLFN12Q8IYM2 578 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 ADCY4Q8NFM4 1077 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 BRF1Q92994 677 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 PRDM5Q9NQX1 630 aaPredicted RBP4.68□□□□□ -1.66
CD44-229ENST00000528672 ZC3H7BQ9UGR2 993 aaKnown RBP4.68□□□□□ -1.66
CD44-229ENST00000528672 ZNF451Q9Y4E5 1061 aa4.68□□□□□ -1.66
CD44-229ENST00000528672 EPHX1P07099 455 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 IBSPP21815 317 aaPredicted RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 CYP7A1P22680 504 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 ETV3P41162 512 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 KIR3DL1P43629 444 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 YARSP54577 528 aaKnown RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 CASP7P55210 303 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 OXCT1P55809 520 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 PRKCQQ04759 706 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 MLECQ14165 292 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 SF1Q15637 639 aaKnown RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 PTPROQ16827 1216 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 C21orf62-AS1Q17RA5 79 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 GNPTABQ3T906 1256 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 TNNI3KQ59H18 835 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 RNF187Q5TA31 235 aaPredicted RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 YOD1Q5VVQ6 348 aaPredicted RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 FOXB2Q5VYV0 432 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 VHLLQ6RSH7 139 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 LRP10Q7Z4F1 713 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 FAM178BQ8IXR5 827 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 ZNF513Q8N8E2 541 aaPredicted RBP4.67□□□□□ -1.66
CD44-229ENST00000528672 CYB5D2Q8WUJ1 264 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 KREMEN1Q96MU8 473 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 DEPDC7Q96QD5 511 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 DNAJC7Q99615 494 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 LRRC4CQ9HCJ2 640 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 PLAGL2Q9UPG8 496 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 CEP131Q9UPN4 1083 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 SLC5A6Q9Y289 635 aa4.67□□□□□ -1.66
CD44-229ENST00000528672 GNAT3A8MTJ3 354 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 ENPP3O14638 875 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 ITIH2P19823 946 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 CHMP4BP1P59074 171 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 IGBP1P78318 339 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 NBPF12Q5TAG4 269 aaPredicted RBP4.66□□□□□ -1.66
CD44-229ENST00000528672 CDKAL1Q5VV42 579 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 ARHGAP27Q6ZUM4 889 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 PIWIL2Q8TC59 973 aaKnown RBP4.66□□□□□ -1.66
CD44-229ENST00000528672 RNPC3Q96LT9 517 aaKnown RBP4.66□□□□□ -1.66
CD44-229ENST00000528672 CCDC74BQ96LY2 380 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 PRDM14Q9GZV8 571 aa4.66□□□□□ -1.66
CD44-229ENST00000528672 ZNF214Q9UL59 606 aaPredicted RBP4.66□□□□□ -1.66
CD44-229ENST00000528672 TPX2Q9ULW0 747 aaKnown RBP4.66□□□□□ -1.66
CD44-229ENST00000528672 hCG_2014768A0A024R1R8 64 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 JAG1P78504 1218 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 TNK2Q07912 1038 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 ZPBP2Q6X784 338 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 THAP5Q7Z6K1 395 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 PLD6Q8N2A8 252 aaKnown RBP4.65□□□□□ -1.67
CD44-229ENST00000528672 ZCRB1Q8TBF4 217 aaKnown RBP4.65□□□□□ -1.67
CD44-229ENST00000528672 BCL7CQ8WUZ0 217 aaPredicted RBP4.65□□□□□ -1.67
CD44-229ENST00000528672 ASB11Q8WXH4 323 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 GPATCH3Q96I76 525 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 HRASLS5Q96KN8 279 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 TM9SF2Q99805 663 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 MCMBPQ9BTE3 642 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 KRTAP4-2Q9BYR5 136 aa4.65□□□□□ -1.67
CD44-229ENST00000528672 SUCOQ9UBS9 1254 aaKnown RBP4.65□□□□□ -1.67
CD44-229ENST00000528672 ADGRE2Q9UHX3 823 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms