RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 KCNQ1P51787 676 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 PDE1AP54750 535 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 TFF2Q03403 129 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 FAAP100Q0VG06 881 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 FAM47AQ5JRC9 791 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 WDR78Q5VTH9 848 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 ANO1Q5XXA6 986 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L2Q6R6M4 530 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 METTL16Q86W50 562 aaKnown RBP13.2□□□□□ -0.3
NEDD8-204ENST00000526430 SLC44A5Q8NCS7 719 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 HERVK_113Q902F9 699 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 OSBPL3Q9H4L5 887 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 PIH1D3Q9NQM4 214 aaKnown RBP13.2□□□□□ -0.3
NEDD8-204ENST00000526430 ABCF2Q9UG63 623 aa13.2□□□□□ -0.3
NEDD8-204ENST00000526430 COL11A1P12107 1806 aaPredicted RBP13.2□□□□□ -0.3
NEDD8-204ENST00000526430 ZNF318Q5VUA4 2279 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 GRXCR1A8MXD5 290 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L15C9J2P7 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L13C9JLJ4 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L11C9JVI0 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L18D6R9N7 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L22D6RA61 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L17D6RBQ6 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L19D6RCP7 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L20D6RJB6 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 STRNO43815 780 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 PQBP1O60828 265 aaKnown RBP13.19□□□□□ -0.3
NEDD8-204ENST00000526430 TIMP1P01033 207 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 MRE11P49959 708 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 JAG1P78504 1218 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 MECOMQ03112 1051 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 USP17L24Q0WX57 530 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 PPIGQ13427 754 aaKnown RBP eCLIP13.19□□□□□ -0.3
NEDD8-204ENST00000526430 TTC39AQ5SRH9 613 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 TMEM240Q5SV17 173 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 MFSD5Q6N075 450 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 CENPQQ7L2Z9 268 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-204ENST00000526430 CCDC136Q96JN2 1154 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 DHX36Q9H2U1 1008 aaKnown RBP13.19□□□□□ -0.3
NEDD8-204ENST00000526430 BOLA2Q9H3K6 86 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 ECHDC1Q9NTX5 307 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 MSRAQ9UJ68 235 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 ZBTB21Q9ULJ3 1066 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 WDFY4Q6ZS81 3184 aa13.19□□□□□ -0.3
NEDD8-204ENST00000526430 A0A1W2PQ45 241 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-204ENST00000526430 A0A1W2PQY0 241 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 MYCNP04198 464 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-204ENST00000526430 MX1P20591 662 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 C16orf59Q7L2K0 433 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 DPP9Q86TI2 863 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 HAUS7Q99871 368 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 DNAJC18Q9H819 358 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 SLC28A3Q9HAS3 691 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 NRBP1Q9UHY1 535 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 TBX21Q9UL17 535 aa13.18□□□□□ -0.3
NEDD8-204ENST00000526430 TTC41PQ6P2S7 1318 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 DCDC2CA8MYV0 355 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 CHGBP05060 677 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 LDHCP07864 332 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 ADORA2AP29274 412 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 PSRC1Q6PGN9 363 aaPredicted RBP13.17□□□□□ -0.3
NEDD8-204ENST00000526430 CATSPERGQ6ZRH7 1159 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 RNF180Q86T96 592 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 XPNPEP3Q9NQH7 507 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 SLC5A4Q9NY91 659 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 BTBD7Q9P203 1132 aa13.17□□□□□ -0.3
NEDD8-204ENST00000526430 TLL1O43897 1013 aa13.16□□□□□ -0.3
NEDD8-204ENST00000526430 RARBP10826 455 aa13.16□□□□□ -0.3
NEDD8-204ENST00000526430 POU3F3P20264 500 aaPredicted RBP13.16□□□□□ -0.3
NEDD8-204ENST00000526430 GSTO1P78417 241 aa13.16□□□□□ -0.3
NEDD8-204ENST00000526430 ERICH6Q7L0X2 663 aa13.16□□□□□ -0.3
NEDD8-204ENST00000526430 COG5Q9UP83 839 aa13.16□□□□□ -0.3
NEDD8-204ENST00000526430 MROH7Q68CQ1 1323 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 MYH8P13535 1937 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 SPDYE16A6NNV3 312 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-204ENST00000526430 PRR33A8MZF0 331 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 PI4K2BG5E9Z4 385 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 SMIM22K7EJ46 135 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 SHROOM1Q2M3G4 852 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-204ENST00000526430 SLFNL1Q499Z3 407 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 ADGRA1Q86SQ6 560 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 FOXP4Q8IVH2 680 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-204ENST00000526430 TEX11Q8IYF3 940 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 ABRAQ8N0Z2 381 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 SHCBP1Q8NEM2 672 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 NSUN4Q96CB9 384 aaKnown RBP13.15□□□□□ -0.3
NEDD8-204ENST00000526430 TSEN34Q9BSV6 310 aaKnown RBP13.15□□□□□ -0.3
NEDD8-204ENST00000526430 NKX2-4Q9H2Z4 354 aa13.15□□□□□ -0.3
NEDD8-204ENST00000526430 MCM3APO60318 1980 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 FAM86C2PA6NEL3 165 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 GOLIM4O00461 696 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 GDF11O95390 407 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 VCAM1P19320 739 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 USP14P54578 494 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 ZNF365Q70YC5 407 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 TMEM199Q8N511 208 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 NUP133Q8WUM0 1156 aa13.14□□□□□ -0.31
NEDD8-204ENST00000526430 KHSRPQ92945 711 aaKnown RBP eCLIP13.14□□□□□ -0.314e-7■■□□□ 13.3
NEDD8-204ENST00000526430 KIAA1683Q9H0B3 1180 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms