RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 ZNF580Q9UK33 172 aa1.15□□□□□ -2.23
RNU6-539P-201ENST00000516665 CEP131Q9UPN4 1083 aa1.15□□□□□ -2.23
RNU6-539P-201ENST00000516665 FNDC3AQ9Y2H6 1198 aaKnown RBP1.15□□□□□ -2.23
RNU6-539P-201ENST00000516665 FAN1Q9Y2M0 1017 aa1.15□□□□□ -2.23
RNU6-539P-201ENST00000516665 COL3A1P02461 1466 aaPredicted RBP1.15□□□□□ -2.23
RNU6-539P-201ENST00000516665 SETD1BQ9UPS6 1966 aaKnown RBP1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 LZTS3O60299 673 aaPredicted RBP1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZFPL1O95159 310 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 B3GALT4O96024 378 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 IGFBP4P22692 258 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 TMEM62Q0P6H9 643 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 FHL3Q13643 280 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 TARBP2Q15633 366 aaKnown RBP1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 DLK2Q6UY11 383 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 TRIM50Q86XT4 487 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 RPUSD2Q8IZ73 545 aaKnown RBP1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 SYTL4Q96C24 671 aaPredicted RBP1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 NOX5Q96PH1 765 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 CHRDQ9H2X0 955 aa1.14□□□□□ -2.23
RNU6-539P-201ENST00000516665 TEKQ02763 1124 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 IRF5Q13568 498 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 CBX2Q14781 532 aaPredicted RBP1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 SURF1Q15526 300 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 SLC14A2Q15849 920 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 C9orf131Q5VYM1 1079 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 SP5Q6BEB4 398 aaPredicted RBP1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 LAIR1Q6GTX8 287 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 CEP128Q6ZU80 1094 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 FAM124AQ86V42 546 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 SIX5Q8N196 739 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 GPR152Q8TDT2 470 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZNF594Q96JF6 807 aaPredicted RBP1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 VPS33BQ9H267 617 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 LATS2Q9NRM7 1088 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 FBLN5Q9UBX5 448 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 HCFC2Q9Y5Z7 792 aa1.13□□□□□ -2.23
RNU6-539P-201ENST00000516665 NOTCH4Q99466 2003 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 A0A096LPE4 126 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 A0A1W2PPZ6 126 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 USP17L5A8MUK1 530 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ATP1A2P50993 1020 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ERVK-24P63145 666 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 SPRED3Q2MJR0 410 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZC3H12AQ5D1E8 599 aaKnown RBP1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 PPM1JQ5JR12 505 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 COX20Q5RI15 118 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZC3H14Q6PJT7 736 aaKnown RBP1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZNF438Q7Z4V0 828 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 C1orf210Q8IVY1 113 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 REXO1Q8N1G1 1221 aaKnown RBP1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 OGFOD1Q8N543 542 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 IL17DQ8TAD2 202 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 MDFICQ9P1T7 246 aa1.12□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZAR1LA6NP61 321 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 LRIG2O94898 1065 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 KIR3DL1P43629 444 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 EPHB4P54760 987 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 AP3B2Q13367 1082 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 KRTAP13-3Q3SY46 172 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 HS1BP3Q53T59 392 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 MCTP2Q6DN12 878 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 PDE12Q6L8Q7 609 aaKnown RBP1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 TTLL7Q6ZT98 887 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 HDXQ7Z353 690 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 TSPYL5Q86VY4 417 aaPredicted RBP1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 LARGE2Q8N3Y3 721 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 DDX54Q8TDD1 881 aaKnown RBP1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 TNFRSF12AQ9NP84 129 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 JADE2Q9NQC1 790 aa1.11□□□□□ -2.23
RNU6-539P-201ENST00000516665 PALM3A6NDB9 673 aaPredicted RBP1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 DNAJC9-AS1A6NH13 148 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 GRIA4P48058 902 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 SMAD4Q13485 552 aaKnown RBP1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 FAM26FQ5R3K3 315 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 KANK4Q5T7N3 995 aaPredicted RBP1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 PLEKHH3Q7Z736 793 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 HINFPQ9BQA5 517 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 MEGF9Q9H1U4 602 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 TRIT1Q9H3H1 467 aaKnown RBP1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 TBC1D2BQ9UPU7 963 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 FRMD4BQ9Y2L6 1034 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 REXO2Q9Y3B8 237 aaKnown RBP1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 CSADQ9Y600 493 aa1.1□□□□□ -2.23
RNU6-539P-201ENST00000516665 ARHGEF17Q96PE2 2063 aaPredicted RBP1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 EREGO14944 169 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 FOXS1O43638 330 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 GJA4P35212 333 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 MAPKAPK2P49137 400 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 FAAP100Q0VG06 881 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 LRFN4Q6PJG9 635 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 C1QL2Q7Z5L3 287 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 B3GNT8Q7Z7M8 397 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 TXNDC5Q8NBS9 432 aaKnown RBP1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 SMRP1Q8NCR6 262 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 ZBTB8AQ96BR9 441 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 SLC29A3Q9BZD2 475 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 R3HDMLQ9H3Y0 253 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 GPATCH2Q9NW75 528 aa1.09□□□□□ -2.23
RNU6-539P-201ENST00000516665 FAM13BQ9NYF5 915 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms