RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HSPA4P34932 840 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 CYB5R4Q7L1T6 521 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 CTU1Q7Z7A3 348 aaKnown RBP16.75■□□□□ 0.27
NUP54-216ENST00000514901 ENAHQ8N8S7 591 aaPredicted RBP16.75■□□□□ 0.27
NUP54-216ENST00000514901 CHURC1Q8WUH1 139 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 DCAF4Q8WV16 495 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 KAT14Q9H8E8 782 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 RBPJLQ9UBG7 517 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 PPP1R9AQ9ULJ8 1098 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 TAF6LQ9Y6J9 622 aa16.75■□□□□ 0.27
NUP54-216ENST00000514901 IFIT3O14879 490 aaKnown RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 PLA2G6O60733 806 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 HMGB1P09429 215 aaKnown RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 MCCP23508 829 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 HOXD10P28358 340 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 CCNA1P78396 465 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 PKN2Q16513 984 aaKnown RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 IFIT1BQ5T764 474 aaKnown RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 FAM160B2Q86V87 743 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 MB21D2Q8IYB1 491 aaPredicted RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 PRPF38AQ8NAV1 312 aaKnown RBP16.74■□□□□ 0.27
NUP54-216ENST00000514901 CD99L2Q8TCZ2 262 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 SLF1Q9BQI6 1058 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 USP26Q9BXU7 913 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 EFCC1Q9HA90 598 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 ADAMTS5Q9UNA0 930 aa16.74■□□□□ 0.27
NUP54-216ENST00000514901 FDX1P10109 184 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 PSMC4P43686 418 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 FCGRTP55899 365 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 ERVK-9P63128 1117 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 ERVK-24P63145 666 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 SEC23AQ15436 765 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 TMTC2Q8N394 836 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 PNMA1Q8ND90 353 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 TMEM87BQ96K49 555 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 NEK1Q96PY6 1258 aa16.73■□□□□ 0.27
NUP54-216ENST00000514901 NUP88Q99567 741 aaPredicted RBP16.73■□□□□ 0.27
NUP54-216ENST00000514901 TMEM232C9JQI7 657 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 FMNL1O95466 1100 aaPredicted RBP16.72■□□□□ 0.27
NUP54-216ENST00000514901 STAT2P52630 851 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 PRMT2P55345 433 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 WTAPQ15007 396 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 TMEM67Q5HYA8 995 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 CCAR1Q8IX12 1150 aaKnown RBP16.72■□□□□ 0.27
NUP54-216ENST00000514901 RASEFQ8IZ41 740 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 IGDCC4Q8TDY8 1250 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 PAGR1Q9BTK6 254 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 TXNRD2Q9NNW7 524 aa16.72■□□□□ 0.27
NUP54-216ENST00000514901 ISY1Q9ULR0 285 aaKnown RBP16.72■□□□□ 0.27
NUP54-216ENST00000514901 WDR19Q8NEZ3 1342 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 VWA5AO00534 786 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 PRC1O43663 620 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 CNMDO75829 334 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 SNHG28P0DPA3 235 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 PDHBP11177 359 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 PSMA5P28066 241 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 MAPK4P31152 587 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 CCDC96Q2M329 555 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 Q3C1V9 767 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 GPATCH4Q5T3I0 446 aaKnown RBP16.71■□□□□ 0.27
NUP54-216ENST00000514901 COL13A1Q5TAT6 717 aaPredicted RBP16.71■□□□□ 0.27
NUP54-216ENST00000514901 POTEEQ6S8J3 1075 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 DHX32Q7L7V1 743 aaKnown RBP16.71■□□□□ 0.27
NUP54-216ENST00000514901 OTOP1Q7RTM1 612 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 ATG4CQ96DT6 458 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 FBXO28Q9NVF7 368 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 TRIM17Q9Y577 477 aa16.71■□□□□ 0.27
NUP54-216ENST00000514901 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.27
NUP54-216ENST00000514901 ZBED4O75132 1171 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 ANTXR2P58335 489 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 IKQ13123 557 aaPredicted RBP16.7■□□□□ 0.26
NUP54-216ENST00000514901 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
NUP54-216ENST00000514901 BTNL9Q6UXG8 535 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 KCTD1Q719H9 257 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 CHST3Q7LGC8 479 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 KIFC2Q96AC6 838 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 COA7Q96BR5 231 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 TRIM47Q96LD4 638 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 SPATC1LQ9H0A9 340 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 BTBD7Q9P203 1132 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 MTMR7Q9Y216 660 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 SNX14Q9Y5W7 946 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 RLFQ13129 1914 aa16.7■□□□□ 0.26
NUP54-216ENST00000514901 TNPO2O14787 897 aaKnown RBP16.69■□□□□ 0.26
NUP54-216ENST00000514901 COPB2P35606 906 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 LIFRP42702 1097 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 EXOSC10Q01780 885 aaKnown RBP16.69■□□□□ 0.26
NUP54-216ENST00000514901 ZNF543Q08ER8 600 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 ASPRV1Q53RT3 343 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 CATIPQ7Z7H3 387 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 SHCBP1Q8NEM2 672 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 ARHGAP39Q9C0H5 1083 aa16.69■□□□□ 0.26
NUP54-216ENST00000514901 ATP2A1O14983 1001 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 SLC25A27O95847 323 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 PARP1P09874 1014 aaKnown RBP16.68■□□□□ 0.26
NUP54-216ENST00000514901 OAZ1P54368 228 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 PLS1Q14651 629 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 TMEM132BQ14DG7 1078 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 ADCK5Q3MIX3 580 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 FBXO46Q6PJ61 603 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms