RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	SLC12A7	Q9Y666	1083 aa		7	□□□□□ -1.29
MATR3-223	ENST00000514402	KRTAP4-8	A0A0G2JLE6	195 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	ACR	P10323	421 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	PMS1	P54277	932 aa	Known RBP	6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	TEK	Q02763	1124 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	NR0B2	Q15466	257 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	BBS9	Q3SYG4	887 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	OGFOD2	Q6N063	350 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	LILRA2	Q8N149	483 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	OXR1	Q8N573	874 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	SEC16B	Q96JE7	1060 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	CRBN	Q96SW2	442 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	GOLGA2P5	Q9HBQ8	144 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	GINM1	Q9NU53	330 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	PPT2	Q9UMR5	302 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	ZNF281	Q9Y2X9	895 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	PCDHB12	Q9Y5F1	795 aa		6.99	□□□□□ -1.29
MATR3-223	ENST00000514402	FITM1	A5D6W6	292 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	ZGLP1	P0C6A0	271 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	PCBP3	P57721	371 aa	Known RBP	6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	CHRNE	Q04844	493 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	ANKRD39	Q53RE8	183 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	TMEM67	Q5HYA8	995 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	FBXW10	Q5XX13	1052 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	LSR	Q86X29	649 aa	Predicted RBP	6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	SPPL2C	Q8IUH8	684 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	ANKS4B	Q8N8V4	417 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	C19orf47	Q8N9M1	422 aa	Known RBP	6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	LINC00116	Q8NCU8	138 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	TCTN2	Q96GX1	697 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	ADAMTS10	Q9H324	1103 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	STRIP2	Q9ULQ0	834 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	EFR3B	Q9Y2G0	817 aa		6.98	□□□□□ -1.29
MATR3-223	ENST00000514402	RBAK-RBAKDN	I3L0D1	243 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	GIPR	P48546	466 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	EIF6	P56537	245 aa	Known RBP	6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	AUH	Q13825	339 aa	Known RBP	6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	TMC3	Q7Z5M5	1100 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	KRTAP19-1	Q8IUB9	90 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	USHBP1	Q8N6Y0	703 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	ABHD4	Q8TB40	342 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	MYLIP	Q8WY64	445 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	PRDM14	Q9GZV8	571 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	CCSER2	Q9H7U1	834 aa		6.97	□□□□□ -1.29
MATR3-223	ENST00000514402	PRAMEF1	O95521	474 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	HK2	P52789	917 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	FYB2	Q5VWT5	728 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	C9orf131	Q5VYM1	1079 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	C7orf61	Q8IZ16	206 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	ZNF512B	Q96KM6	892 aa	Predicted RBP	6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	SRRT	Q9BXP5	876 aa	Known RBP	6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	CHST7	Q9NS84	486 aa		6.96	□□□□□ -1.3
MATR3-223	ENST00000514402	SSU72P8	A0A1W2PR75	194 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	ZNF503-AS2	A6NEH8	195 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	FARP2	O94887	1054 aa	Predicted RBP	6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	TCF3	P15923	654 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	YBX3	P16989	372 aa	Known RBP eCLIP	6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	SNW1	Q13573	536 aa	Known RBP	6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	SNX17	Q15036	470 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	UNC5A	Q6ZN44	842 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	CCDC144CP	Q8IYA2	1237 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	LINC01599	Q8WXQ3	324 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	FBXL21	Q9UKT6	434 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	TCFL5	Q9UL49	500 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	INPP5F	Q9Y2H2	1132 aa		6.95	□□□□□ -1.3
MATR3-223	ENST00000514402	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	BMP8B	P34820	402 aa		6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	KIR2DL1	P43626	348 aa	Predicted RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	KIR2DL2	P43627	348 aa	Predicted RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	ACBD3	Q9H3P7	528 aa		6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	PHAX	Q9H814	394 aa	Known RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	SP110	Q9HB58	689 aa		6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	CWC22	Q9HCG8	908 aa	Known RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	ZNF214	Q9UL59	606 aa	Predicted RBP	6.94	□□□□□ -1.3
MATR3-223	ENST00000514402	LRRC10B	A6NIK2	292 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402		C9IYK1	514 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	SHOX	O15266	292 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	GSN	P06396	782 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	NASP	P49321	788 aa	Predicted RBP	6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	MPZL3	Q6UWV2	235 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	CCDC81	Q6ZN84	652 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	SHD	Q96IW2	340 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	FAM84A	Q96KN4	292 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	G6PC3	Q9BUM1	346 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	FOXP3	Q9BZS1	431 aa		6.93	□□□□□ -1.3
MATR3-223	ENST00000514402	SYP	P08247	313 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	RPL10	P27635	214 aa	Known RBP	6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	ERCC5	P28715	1186 aa	Predicted RBP	6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	CASP7	P55210	303 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	ZYX	Q15942	572 aa	Known RBP	6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	RUFY4	Q6ZNE9	571 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	WAPL	Q7Z5K2	1190 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	PPFIBP1	Q86W92	1011 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	VPS37D	Q86XT2	251 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	MAP6	Q96JE9	813 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	FCRL2	Q96LA5	508 aa	Predicted RBP	6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	GFOD1	Q9NXC2	390 aa		6.92	□□□□□ -1.3
MATR3-223	ENST00000514402	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	6.92	□□□□□ -1.3
MATR3-223	ENST00000514402		A0A087WZG4	1122 aa		6.91	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms