RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ANKRD13AQ8IZ07 590 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 DCAF4Q8WV16 495 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 LZTS2Q9BRK4 669 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 AS3MTQ9HBK9 375 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 MAD2L2Q9UI95 211 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 MTMR7Q9Y216 660 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 CSADQ9Y600 493 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 SNCAIPQ9Y6H5 919 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 ZHX2Q9Y6X8 837 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 PTPDC1A2A3K4 754 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 UBE2Q2LH0YL09 131 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 DTNBO60941 627 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 NDUFB10O96000 172 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 CTCFP49711 727 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 HMGN5P82970 282 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 ZNF543Q08ER8 600 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 NOGQ13253 232 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 ASPRV1Q53RT3 343 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 STAG2Q8N3U4 1231 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 SRBD1Q8N5C6 995 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 ZNF280CQ8ND82 737 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 GMCL1Q96IK5 515 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 KIAA1683Q9H0B3 1180 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 VCPKMTQ9H867 229 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 GOPCQ9HD26 462 aa15.12■□□□□ 0.01
LIMCH1-220ENST00000514190 USP17L10C9JJH3 530 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 KLRF2D3W0D1 207 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 PLEKHA8P1O95397 391 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 SMARCA1P28370 1054 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 GJB2P29033 226 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 DDIT3P35638 169 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 ZNF157P51786 506 aaPredicted RBP15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 SPP2Q13103 211 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 GPATCH4Q5T3I0 446 aaKnown RBP15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 NBPF11Q86T75 865 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 CCDC102AQ96A19 550 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 BEGAINQ9BUH8 593 aa15.11■□□□□ 0.01
LIMCH1-220ENST00000514190 FAM155AB1AL88 458 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 FMNL1O95466 1100 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 GOLGA8HP0CJ92 632 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 FDPSP14324 419 aaKnown RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 SLC1A4P43007 532 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 BACE1P56817 501 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 SSRP1Q08945 709 aaKnown RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 KIAA1755Q5JYT7 1200 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 RASGRP2Q7LDG7 609 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 ERO1BQ86YB8 467 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 CMTR1Q8N1G2 835 aaKnown RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 PHKBQ93100 1093 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 DDX11Q96FC9 970 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 CLMNQ96JQ2 1002 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 FEZ1Q99689 392 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 GPCPD1Q9NPB8 672 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 ORC3Q9UBD5 711 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 AFG3L2Q9Y4W6 797 aa15.1■□□□□ 0.01
LIMCH1-220ENST00000514190 SPDYE5A6NIY4 337 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 C19orf81C9J6K1 198 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 PRPF3O43395 683 aaKnown RBP15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 RAD21O60216 631 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 SLC10A3P09131 477 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 BMP3P12645 472 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 USP14P54578 494 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 PPATQ06203 517 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 CCDC96Q2M329 555 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 SLC35G1Q2M3R5 365 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 TRIM22Q8IYM9 498 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 CCDC82Q8N4S0 544 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 SPZ1Q9BXG8 430 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 SLC26A6Q9BXS9 759 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 RNF26Q9BY78 433 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 ELP3Q9H9T3 547 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 PRDM10Q9NQV6 1147 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 CIZ1Q9ULV3 898 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 KIF3AQ9Y496 699 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 V9GY48 417 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 FRMPD2Q68DX3 1309 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 STK36Q9NRP7 1315 aa15.09■□□□□ 0.01
LIMCH1-220ENST00000514190 PPFIA3O75145 1194 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 HSPA8P11142 646 aaKnown RBP15.08■□□□□ 0
LIMCH1-220ENST00000514190 PDCP20941 246 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 MTMR2Q13614 643 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 IFFO2Q5TF58 517 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 TTBK2Q6IQ55 1244 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 KCTD1Q719H9 257 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 RASAL3Q86YV0 1011 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 SPICE1Q8N0Z3 855 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 FAM184AQ8NB25 1140 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 LPAR1Q92633 364 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 SLC10A4Q96EP9 437 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 ZIC5Q96T25 663 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 NUP88Q99567 741 aaPredicted RBP15.08■□□□□ 0
LIMCH1-220ENST00000514190 UBA5Q9GZZ9 404 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 RIOX1Q9H6W3 641 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 EMILIN3Q9NT22 766 aa15.08■□□□□ 0
LIMCH1-220ENST00000514190 TRIM75PA6NK02 468 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CXCL11O14625 94 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CA12O43570 354 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CYTH3O43739 400 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 PLA2G6O60733 806 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 DEXIO95424 95 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms