RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 TXNRD3Q86VQ6 643 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 KRT222Q8N1A0 295 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 PNMA1Q8ND90 353 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 WDR66Q8TBY9 1149 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 RMND1Q9NWS8 449 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 CTNND2Q9UQB3 1225 aa20.32■□□□□ 0.84
CCHCR1-228ENST00000509552 SLC4A8Q2Y0W8 1093 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 RRAGBQ5VZM2 374 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 PDXDC2PQ6P474 469 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 BLZF1Q9H2G9 400 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 MKNK2Q9HBH9 465 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 PCDHA4Q9UN74 947 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 RTCBQ9Y3I0 505 aaKnown RBP20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 TPM1P09493 284 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 CCDC175P0C221 793 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 ANKIB1Q9P2G1 1089 aa20.31■□□□□ 0.84
CCHCR1-228ENST00000509552 EFCAB8A8MWE9 144 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 BAG3O95817 575 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 VEGFAP15692 232 aaPredicted RBP20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 TM4SF1P30408 202 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 PBX1P40424 430 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 GSTO1P78417 241 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 RBL2Q08999 1139 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 ANKS1AQ92625 1134 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 ARGLU1Q9NWB6 273 aaPredicted RBP20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 RWDD2AQ9UIY3 292 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 BAZ2BQ9UIF8 2168 aaKnown RBP20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 FANCGO15287 622 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 SPAG1Q07617 926 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 IL17AQ16552 155 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 ANKRD20A12PQ8NF67 263 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 CARD6Q9BX69 1037 aa20.3■□□□□ 0.84
CCHCR1-228ENST00000509552 COL24A1Q17RW2 1714 aa20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 CNGA4Q8IV77 575 aa20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 CPLX3Q8WVH0 158 aa20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 GPKOWQ92917 476 aaPredicted RBP eCLIP20.29■□□□□ 0.845e-9■■■■□ 21.7
CCHCR1-228ENST00000509552 DESI2Q9BSY9 194 aa20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 IL17RBQ9NRM6 502 aa20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 MKRN1Q9UHC7 482 aaKnown RBP20.29■□□□□ 0.84
CCHCR1-228ENST00000509552 CCDC194A0A1B0GVG4 234 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 TSPY3P0CV98 308 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 TSPY8P0CW00 308 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 PAK1Q13153 545 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 GRM4Q14833 912 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 CCDC148Q8NFR7 591 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 LEMD3Q9Y2U8 911 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 IRS2Q9Y4H2 1338 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 TADA3O75528 432 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 BMS1Q14692 1282 aaKnown RBP20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 ZNF658Q5TYW1 1059 aaPredicted RBP20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 ZNF444Q8N0Y2 327 aaPredicted RBP20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 SH3RF3Q8TEJ3 882 aaPredicted RBP20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 CCDC51Q96ER9 411 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 DYNLL2Q96FJ2 89 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 WDR24Q96S15 920 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 ITIH6Q6UXX5 1313 aa20.28■□□□□ 0.84
CCHCR1-228ENST00000509552 SOWAHDA6NJG2 315 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 MFAP3LO75121 409 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 RPN1P04843 607 aaKnown RBP20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 STAT6P42226 847 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 MAP3K9P80192 1104 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 GABPB1Q06547 395 aaPredicted RBP20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 GALNT17Q6IS24 598 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 STAG2Q8N3U4 1231 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 C4orf32Q8N8J7 132 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 LIMA1Q9UHB6 759 aaKnown RBP20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 PRDM4Q9UKN5 801 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 ROBO3Q96MS0 1386 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 ADAMTS3O15072 1205 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 DTHD1Q6ZMT9 781 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 PTF1AQ7RTS3 328 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 ARHGEF1Q92888 912 aaKnown RBP20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 MTRQ99707 1265 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 TCP11L1Q9NUJ3 509 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 MAD2L2Q9UI95 211 aa20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 CCNL1Q9UK58 526 aaPredicted RBP20.27■□□□□ 0.84
CCHCR1-228ENST00000509552 FAM205AQ6ZU69 1335 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 N4BP3O15049 544 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 LDHCP07864 332 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 MTF1Q14872 753 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 KARSQ15046 597 aaKnown RBP20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 FAM53CQ9NYF3 392 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 LRRC10BA6NIK2 292 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 CASP14P31944 242 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 CCT6AP40227 531 aaKnown RBP20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 CLCN6P51797 869 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 KRT31Q15323 416 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 VPS72Q15906 364 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 ZNF804AQ7Z570 1209 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 RASSF8Q8NHQ8 419 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 NELFBQ8WX92 580 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 ZNF287Q9HBT7 754 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 ZNF446Q9NWS9 450 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 MRFAP1Q9Y605 127 aa20.26■□□□□ 0.83
CCHCR1-228ENST00000509552 GRAPQ13588 217 aa20.25■□□□□ 0.83
CCHCR1-228ENST00000509552 GRAPLQ8TC17 118 aaPredicted RBP20.25■□□□□ 0.83
CCHCR1-228ENST00000509552 DISC1Q9NRI5 854 aa20.25■□□□□ 0.83
CCHCR1-228ENST00000509552 ADGRG1Q9Y653 693 aa20.25■□□□□ 0.83
CCHCR1-228ENST00000509552 USP17L3A6NCW0 530 aa20.25■□□□□ 0.83
CCHCR1-228ENST00000509552 USP17L4A6NCW7 530 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms