RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 GPR182O15218 404 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 FANCGO15287 622 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 ZSCAN22P10073 491 aaPredicted RBP6.56□□□□□ -1.36
NUP54-206ENST00000508465 SAFB2Q14151 953 aaKnown RBP eCLIP6.56□□□□□ -1.36
NUP54-206ENST00000508465 PPM1JQ5JR12 505 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 PRR23BQ6ZRT6 265 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 STK35Q8TDR2 534 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 ALKBH8Q96BT7 664 aaKnown RBP6.56□□□□□ -1.36
NUP54-206ENST00000508465 BCO2Q9BYV7 579 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 C14orf93Q9H972 538 aaKnown RBP6.56□□□□□ -1.36
NUP54-206ENST00000508465 USTQ9Y2C2 406 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 CSADQ9Y600 493 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 FAM135BQ49AJ0 1406 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 NKTRP30414 1462 aaKnown RBP6.55□□□□□ -1.36
NUP54-206ENST00000508465 NRXN3Q9Y4C0 1643 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 FAM155AB1AL88 458 aaPredicted RBP6.55□□□□□ -1.36
NUP54-206ENST00000508465 GDNFP39905 211 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 TRIM26Q12899 539 aaPredicted RBP6.55□□□□□ -1.36
NUP54-206ENST00000508465 BRINP3Q76B58 766 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 C1QL4Q86Z23 238 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 NPAS4Q8IUM7 802 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 FBXO15Q8NCQ5 510 aaPredicted RBP6.55□□□□□ -1.36
NUP54-206ENST00000508465 CARS2Q9HA77 564 aaKnown RBP6.55□□□□□ -1.36
NUP54-206ENST00000508465 MAPK8IP1Q9UQF2 711 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 SETBP1Q9Y6X0 1596 aa6.55□□□□□ -1.36
NUP54-206ENST00000508465 NWD1Q149M9 1564 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 EOMESO95936 686 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 TMEM253P0C7T8 217 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 ZNF252P-AS1Q0IIN9 211 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 LCNL1Q6ZST4 164 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 CCER1Q8TC90 406 aaPredicted RBP6.54□□□□□ -1.36
NUP54-206ENST00000508465 ORAI2Q96SN7 254 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 KRTAP4-11Q9BYQ6 195 aa6.54□□□□□ -1.36
NUP54-206ENST00000508465 DIP2AQ14689 1571 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 NCOA3Q9Y6Q9 1424 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 KRTAP9-7A8MTY7 169 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 DCDC2CA8MYV0 355 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 IGHA2P01877 340 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 C1QTNF9P0C862 333 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 C12orf40Q86WS4 652 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 PRAM1Q96QH2 718 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 RBCK1Q9BYM8 510 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 CEP44Q9C0F1 390 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 CACNA2D2Q9NY47 1150 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 DHX57Q6P158 1386 aaKnown RBP6.53□□□□□ -1.36
NUP54-206ENST00000508465 PLEKHH1Q9ULM0 1364 aa6.53□□□□□ -1.36
NUP54-206ENST00000508465 PPLO60437 1756 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 LRIG2O94898 1065 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 TRIM37O94972 964 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 XPCQ01831 940 aaPredicted RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 LRRC14Q15048 493 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 ZNF507Q8TCN5 953 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 HSPA12BQ96MM6 686 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 NECAB3Q96P71 396 aaPredicted RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 DIRC2Q96SL1 478 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 HIRIP3Q9BW71 556 aaPredicted RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 NSUN3Q9H649 340 aaKnown RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 ATP13A1Q9HD20 1204 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 POGKQ9P215 609 aa6.52□□□□□ -1.37
NUP54-206ENST00000508465 TPX2Q9ULW0 747 aaKnown RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 LRPPRCP42704 1394 aaKnown RBP6.52□□□□□ -1.37
NUP54-206ENST00000508465 B8ZZF3 427 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 PRRG2O14669 202 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 NTF4P34130 210 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 RING1Q06587 406 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 SFRP5Q5T4F7 317 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 ZBTB37Q5TC79 503 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 CDKAL1Q5VV42 579 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 SCARA3Q6AZY7 606 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 NXPE4Q6UWF7 544 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 PI16Q6UXB8 463 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 ARMCX6Q7L4S7 300 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 AMIGO3Q86WK7 504 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 ELMO3Q96BJ8 720 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 SEMA3GQ9NS98 782 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 RGS17Q9UGC6 210 aaPredicted RBP6.51□□□□□ -1.37
NUP54-206ENST00000508465 RAPGEFL1Q9UHV5 662 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 PCDHA4Q9UN74 947 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 ABCC11Q96J66 1382 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 ROBO1Q9Y6N7 1651 aa6.51□□□□□ -1.37
NUP54-206ENST00000508465 PIK3C2GO75747 1445 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 YTHDC2Q9H6S0 1430 aaKnown RBP6.5□□□□□ -1.37
NUP54-206ENST00000508465 RAC2P15153 192 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 MPRIPQ6WCQ1 1025 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 MFSD4AQ8N468 514 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 GRIN3AQ8TCU5 1115 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 XRN1Q8IZH2 1706 aaKnown RBP6.5□□□□□ -1.37
NUP54-206ENST00000508465 MST1RQ04912 1400 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 ADGRL3Q9HAR2 1447 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 NCANO14594 1321 aa6.5□□□□□ -1.37
NUP54-206ENST00000508465 C1orf167Q5SNV9 1468 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 NPIPB6E9PJ23 425 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 BMP6P22004 513 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.49□□□□□ -1.37
NUP54-206ENST00000508465 MEX3CQ5U5Q3 659 aaKnown RBP6.49□□□□□ -1.37
NUP54-206ENST00000508465 LLGL2Q6P1M3 1020 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 C22orf34Q6ZV56 151 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 TTLL10Q6ZVT0 673 aa6.49□□□□□ -1.37
NUP54-206ENST00000508465 UBE3DQ7Z6J8 389 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms