RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ADD1P35611 737 aaKnown RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 GNAQP50148 359 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 USP14P54578 494 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 BACE1P56817 501 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CCT2P78371 535 aaKnown RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 ATP2B2Q01814 1243 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 ZNF543Q08ER8 600 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 STK3Q13188 491 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 PPIL2Q13356 520 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 TTLL12Q14166 644 aaPredicted RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 RTN1Q16799 776 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 ASPRV1Q53RT3 343 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 GPATCH4Q5T3I0 446 aaKnown RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 SAMD1Q6SPF0 538 aaPredicted RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 MICU3Q86XE3 530 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CCDC83Q8IWF9 413 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 LRRC47Q8N1G4 583 aaKnown RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 NECAB1Q8N987 351 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CTCFLQ8NI51 663 aaPredicted RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 LPAR1Q92633 364 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CLMNQ96JQ2 1002 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 MYL10Q9BUA6 226 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 KCNH4Q9UQ05 1017 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 ZHX2Q9Y6X8 837 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 MCM3APO60318 1980 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 STK36Q9NRP7 1315 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 NDUFB10O96000 172 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 PARP1P09874 1014 aaKnown RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 BMP3P12645 472 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 RXRAP19793 462 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 FUT2Q10981 343 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 SPP2Q13103 211 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 KIAA1755Q5JYT7 1200 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 SLFN13Q68D06 897 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 USP17L2Q6R6M4 530 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 BTNL9Q6UXG8 535 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 TMTC3Q6ZXV5 915 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 NBPF11Q86T75 865 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 CCDC84Q86UT8 332 aaPredicted RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 STAG2Q8N3U4 1231 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 SRBD1Q8N5C6 995 aaKnown RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 NSUN7Q8NE18 718 aaKnown RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 NUP133Q8WUM0 1156 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 SLC10A4Q96EP9 437 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 HHIPL1Q96JK4 782 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 LZTS2Q9BRK4 669 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 SPZ1Q9BXG8 430 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 RIOX1Q9H6W3 641 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 ZNF408Q9H9D4 720 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 ELP3Q9H9T3 547 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 NCOA5Q9HCD5 579 aaKnown RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 EMILIN3Q9NT22 766 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 NAP1L2Q9ULW6 460 aaPredicted RBP8.38□□□□□ -1.07
NUP54-204ENST00000506098 TLL2Q9Y6L7 1015 aa8.38□□□□□ -1.07
NUP54-204ENST00000506098 CNTNAP5Q8WYK1 1306 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 A0A0G2JLL6 359 aaPredicted RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 KLRF2D3W0D1 207 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 IRF6O14896 467 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 WDR46O15213 610 aaKnown RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 PRPF3O43395 683 aaKnown RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 CDKL5O76039 1030 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 ZBTB48P10074 688 aaPredicted RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 GJA5P36382 358 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 SLC1A4P43007 532 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 HMGN5P82970 282 aaKnown RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 MTMR2Q13614 643 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 CPLX2Q6PUV4 134 aaKnown RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 RASGRP2Q7LDG7 609 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 PRRT2Q7Z6L0 340 aaPredicted RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 SAPCD2Q86UD0 394 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 RAB11FIP4Q86YS3 637 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 CCDC144CPQ8IYA2 1237 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 PROCA1Q8NCQ7 364 aaPredicted RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 RGS22Q8NE09 1264 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 OPTNQ96CV9 577 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 MTMR8Q96EF0 704 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 RNF26Q9BY78 433 aaPredicted RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 RNF39Q9H2S5 420 aa8.37□□□□□ -1.07
NUP54-204ENST00000506098 CWC22Q9HCG8 908 aaKnown RBP8.37□□□□□ -1.07
NUP54-204ENST00000506098 THSD7BQ9C0I4 1608 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 TRIM75PA6NK02 468 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 TMEM88BA6NKF7 163 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 CPLX1O14810 134 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 CYTH3O43739 400 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 PLEKHA8P1O95397 391 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 FMNL1O95466 1100 aaPredicted RBP8.36□□□□□ -1.07
NUP54-204ENST00000506098 GOLGA8HP0CJ92 632 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 FDPSP14324 419 aaKnown RBP8.36□□□□□ -1.07
NUP54-204ENST00000506098 HOXA7P31268 230 aaPredicted RBP8.36□□□□□ -1.07
NUP54-204ENST00000506098 DDIT3P35638 169 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 SLC4A3P48751 1232 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 HUNKP57058 714 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 SSRP1Q08945 709 aaKnown RBP8.36□□□□□ -1.07
NUP54-204ENST00000506098 MOGSQ13724 837 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 SLC35G1Q2M3R5 365 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 KCTD1Q719H9 257 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 FAM160B2Q86V87 743 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 CHURC1Q8WUH1 139 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 OTUD5Q96G74 571 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms