RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 KIAA1755Q5JYT7 1200 aa14□□□□□ -0.17
PDLIM5-208ENST00000504489 GMCL1P1Q8NEA9 526 aa14□□□□□ -0.17
PDLIM5-208ENST00000504489 NEK1Q96PY6 1258 aa14□□□□□ -0.17
PDLIM5-208ENST00000504489 UBAC1Q9BSL1 405 aa14□□□□□ -0.17
PDLIM5-208ENST00000504489 MTA3Q9BTC8 594 aa14□□□□□ -0.17
PDLIM5-208ENST00000504489 TNKSO95271 1327 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 WDR19Q8NEZ3 1342 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 TTLL13PA6NNM8 815 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L15C9J2P7 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L13C9JLJ4 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L11C9JVI0 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L18D6R9N7 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L22D6RA61 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L17D6RBQ6 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L19D6RCP7 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L20D6RJB6 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 WDR46O15213 610 aaKnown RBP13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 HMGB1P09429 215 aaKnown RBP13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 OSBPP22059 807 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 MCM5P33992 734 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 ANTXR2P58335 489 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 USP17L24Q0WX57 530 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 SEC23AQ15436 765 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 ADCK5Q3MIX3 580 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 LRRC47Q8N1G4 583 aaKnown RBP13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 ENAHQ8N8S7 591 aaPredicted RBP13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 TMEM47Q9BQJ4 181 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 ZFYVE28Q9HCC9 887 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 PNMA3Q9UL41 463 aa13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 CIZ1Q9ULV3 898 aaPredicted RBP13.99□□□□□ -0.17
PDLIM5-208ENST00000504489 IFIT3O14879 490 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 NDUFB10O96000 172 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 HSPA1AP0DMV8 641 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 HSPA1BP0DMV9 641 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 EXOSC10Q01780 885 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 CRHR2Q13324 411 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 SART3Q15020 963 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 NOM1Q5C9Z4 860 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 CATSPERGQ6ZRH7 1159 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 SPICE1Q8N0Z3 855 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 IGDCC4Q8TDY8 1250 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 GMCL1Q96IK5 515 aa13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 PARK7Q99497 189 aaKnown RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 ASCC2Q9H1I8 757 aaPredicted RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 RPAP3Q9H6T3 665 aaPredicted RBP13.98□□□□□ -0.17
PDLIM5-208ENST00000504489 ADGRA2Q96PE1 1338 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 ERICH2A1L162 156 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 PRC1O43663 620 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 TLR2O60603 784 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 TBC1D8O95759 1140 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 PSMA5P28066 241 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 ANAPC15P60006 121 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 IRX3P78415 501 aaPredicted RBP13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 COL9A3Q14050 684 aaPredicted RBP13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 IFIT1BQ5T764 474 aaKnown RBP13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 SLFN13Q68D06 897 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 DHX32Q7L7V1 743 aaKnown RBP13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 CHST3Q7LGC8 479 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 TMEM87BQ96K49 555 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 JAKMIP1Q96N16 626 aaKnown RBP13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 ZSWIM8A7E2V4 1837 aa13.97□□□□□ -0.17
PDLIM5-208ENST00000504489 MYPNQ86TC9 1320 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 FOXN1O15353 648 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 RAD21O60216 631 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 CYP2C8P10632 490 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 GCLCP48506 637 aaPredicted RBP13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 COG2Q14746 738 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 WTAPQ15007 396 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 TMEM67Q5HYA8 995 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 FAM83BQ5T0W9 1011 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 TMTC2Q8N394 836 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 PNMA1Q8ND90 353 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 DCAF4Q8WV16 495 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 IL17RAQ96F46 866 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 P2RX7Q99572 595 aaKnown RBP13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 TM6SF1Q9BZW5 370 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 R3HDMLQ9H3Y0 253 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 KAT14Q9H8E8 782 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 HOXC10Q9NYD6 342 aa13.96□□□□□ -0.17
PDLIM5-208ENST00000504489 PLXNB2O15031 1838 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 PLA2G6O60733 806 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 SNHG28P0DPA3 235 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 BMP3P12645 472 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 LIFRP42702 1097 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 SLC1A4P43007 532 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 CTCFP49711 727 aaPredicted RBP13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 HERVK_113P62684 666 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 BLOC1S2Q6QNY1 142 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 C17orf99Q6UX52 265 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 LBX2Q6XYB7 198 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 SMCR8Q8TEV9 937 aaPredicted RBP13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 GTF3C2Q8WUA4 911 aaPredicted RBP13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 NUP88Q99567 741 aaPredicted RBP13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 TANGO6Q9C0B7 1094 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 LY9Q9HBG7 655 aa13.95□□□□□ -0.18
PDLIM5-208ENST00000504489 GPR25O00155 361 aa13.94□□□□□ -0.18
PDLIM5-208ENST00000504489 SH2B2O14492 632 aaPredicted RBP13.94□□□□□ -0.18
PDLIM5-208ENST00000504489 FLOT1O75955 427 aa13.94□□□□□ -0.18
PDLIM5-208ENST00000504489 HSPA8P11142 646 aaKnown RBP13.94□□□□□ -0.18
PDLIM5-208ENST00000504489 PDHBP11177 359 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 558.9 ms