RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 ACRP10323 421 aa8.8□□□□□ -1
CCDC39-207ENST00000495817 ANKS3Q6ZW76 656 aa8.8□□□□□ -1
CCDC39-207ENST00000495817 SMARCC1Q92922 1105 aaPredicted RBP8.8□□□□□ -1
CCDC39-207ENST00000495817 ANAPC16Q96DE5 110 aa8.8□□□□□ -1
CCDC39-207ENST00000495817 CARS2Q9HA77 564 aaKnown RBP8.8□□□□□ -1
CCDC39-207ENST00000495817 SUCOQ9UBS9 1254 aaKnown RBP8.8□□□□□ -1
CCDC39-207ENST00000495817 ADAMTS6Q9UKP5 1117 aa8.8□□□□□ -1
CCDC39-207ENST00000495817 SLC12A7Q9Y666 1083 aa8.8□□□□□ -1
CCDC39-207ENST00000495817 BIN1O00499 593 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 LRRN2O75325 713 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 RNASE1P07998 156 aaKnown RBP8.79□□□□□ -1
CCDC39-207ENST00000495817 CANXP27824 592 aaKnown RBP8.79□□□□□ -1
CCDC39-207ENST00000495817 TPP2P29144 1249 aaPredicted RBP8.79□□□□□ -1
CCDC39-207ENST00000495817 NMIQ13287 307 aaPredicted RBP8.79□□□□□ -1
CCDC39-207ENST00000495817 SERINC3Q13530 473 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 NBPF9Q3BBW0 867 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 CCDC81Q6ZN84 652 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 TMEM192Q8IY95 271 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 MKL1Q969V6 931 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 ZSWIM4Q9H7M6 989 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 RC3H2Q9HBD1 1191 aaKnown RBP8.79□□□□□ -1
CCDC39-207ENST00000495817 SIRPGQ9P1W8 387 aa8.79□□□□□ -1
CCDC39-207ENST00000495817 JUNBP17275 347 aaPredicted RBP8.78□□□□□ -1
CCDC39-207ENST00000495817 RAB33AQ14088 237 aa8.78□□□□□ -1
CCDC39-207ENST00000495817 NFE2L2Q16236 605 aa8.78□□□□□ -1
CCDC39-207ENST00000495817 BBS9Q3SYG4 887 aa8.78□□□□□ -1
CCDC39-207ENST00000495817 SYTL5Q8TDW5 730 aaPredicted RBP8.78□□□□□ -1
CCDC39-207ENST00000495817 MKRN2Q9H000 416 aaKnown RBP8.78□□□□□ -1
CCDC39-207ENST00000495817 PRR13Q9NZ81 148 aa8.78□□□□□ -1
CCDC39-207ENST00000495817 DUSP13Q9UII6 198 aa8.78□□□□□ -1
CCDC39-207ENST00000495817 ESR1P03372 595 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 ITGB5P18084 799 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 PMS1P54277 932 aaKnown RBP8.77□□□□□ -1.01
CCDC39-207ENST00000495817 CLEC16AQ2KHT3 1053 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 GIMAP6Q6P9H5 292 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 ATG4DQ86TL0 474 aaPredicted RBP8.77□□□□□ -1.01
CCDC39-207ENST00000495817 LRRN4CLQ8ND94 238 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 FLAD1Q8NFF5 587 aa8.77□□□□□ -1.01
CCDC39-207ENST00000495817 R3HCC1Q9Y3T6 440 aaKnown RBP8.77□□□□□ -1.01
CCDC39-207ENST00000495817 CADPSQ9ULU8 1353 aa8.76□□□□□ -1.01
CCDC39-207ENST00000495817 SMAD7O15105 426 aaKnown RBP8.76□□□□□ -1.01
CCDC39-207ENST00000495817 SMARCA5O60264 1052 aaPredicted RBP8.76□□□□□ -1.01
CCDC39-207ENST00000495817 LTKP29376 864 aa8.76□□□□□ -1.01
CCDC39-207ENST00000495817 CREG2Q8IUH2 290 aa8.76□□□□□ -1.01
CCDC39-207ENST00000495817 FAM177A1Q8N128 213 aaPredicted RBP8.76□□□□□ -1.01
CCDC39-207ENST00000495817 ZNF655Q8N720 491 aaPredicted RBP8.76□□□□□ -1.01
CCDC39-207ENST00000495817 ALPK1Q96QP1 1244 aa8.76□□□□□ -1.01
CCDC39-207ENST00000495817 TRIM55Q9BYV6 548 aa8.76□□□□□ -1.01
CCDC39-207ENST00000495817 U2SURPO15042 1029 aaKnown RBP8.75□□□□□ -1.01
CCDC39-207ENST00000495817 TAL1P17542 331 aaPredicted RBP8.75□□□□□ -1.01
CCDC39-207ENST00000495817 CASP7P55210 303 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 UNC5AQ6ZN44 842 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 LRP10Q7Z4F1 713 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 FAM169BQ8N8A8 192 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 DAGLBQ8NCG7 672 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 HDAC8Q9BY41 377 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 PIF1Q9H611 641 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 PHAXQ9H814 394 aaKnown RBP8.75□□□□□ -1.01
CCDC39-207ENST00000495817 PCDHB12Q9Y5F1 795 aa8.75□□□□□ -1.01
CCDC39-207ENST00000495817 SHISA3A0PJX4 238 aa8.74□□□□□ -1.01
CCDC39-207ENST00000495817 SIGLEC6O43699 453 aa8.74□□□□□ -1.01
CCDC39-207ENST00000495817 RUFY4Q6ZNE9 571 aa8.74□□□□□ -1.01
CCDC39-207ENST00000495817 HNRNPLLQ8WVV9 542 aaKnown RBP8.74□□□□□ -1.01
CCDC39-207ENST00000495817 ZNF512BQ96KM6 892 aaPredicted RBP8.74□□□□□ -1.01
CCDC39-207ENST00000495817 PRDM7Q9NQW5 492 aa8.74□□□□□ -1.01
CCDC39-207ENST00000495817 GDNFP39905 211 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 EGR3Q06889 387 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 AUHQ13825 339 aaKnown RBP8.73□□□□□ -1.01
CCDC39-207ENST00000495817 BMS1Q14692 1282 aaKnown RBP8.73□□□□□ -1.01
CCDC39-207ENST00000495817 TTC6Q86TZ1 520 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 CCDC144CPQ8IYA2 1237 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 MRFAP1L1Q96HT8 127 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 PRDM14Q9GZV8 571 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 ACTR10Q9NZ32 417 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 ZNF214Q9UL59 606 aaPredicted RBP8.73□□□□□ -1.01
CCDC39-207ENST00000495817 CDK11AQ9UQ88 783 aaPredicted RBP8.73□□□□□ -1.01
CCDC39-207ENST00000495817 CTNND2Q9UQB3 1225 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 TMA7Q9Y2S6 64 aaKnown RBP8.73□□□□□ -1.01
CCDC39-207ENST00000495817 PCDHA11Q9Y5I1 949 aa8.73□□□□□ -1.01
CCDC39-207ENST00000495817 TLDC2A0PJX2 215 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 ZYXQ15942 572 aaKnown RBP8.72□□□□□ -1.01
CCDC39-207ENST00000495817 ANKRD39Q53RE8 183 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 RNF111Q6ZNA4 994 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 TMC3Q7Z5M5 1100 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 SYTL4Q96C24 671 aaPredicted RBP8.72□□□□□ -1.01
CCDC39-207ENST00000495817 SLAMF8Q9P0V8 285 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 TMEM59LQ9UK28 342 aa8.72□□□□□ -1.01
CCDC39-207ENST00000495817 FAM86C2PA6NEL3 165 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 WASH4PA8MWX3 477 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 PAX4O43316 350 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 PAPLNO95428 1278 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 PRAMEF1O95521 474 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 ENDOUP21128 410 aaKnown RBP8.71□□□□□ -1.02
CCDC39-207ENST00000495817 C7orf61Q8IZ16 206 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 ASIC4Q96FT7 647 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 CHST7Q9NS84 486 aa8.71□□□□□ -1.02
CCDC39-207ENST00000495817 C9IYK1 514 aa8.7□□□□□ -1.02
CCDC39-207ENST00000495817 RBAK-RBAKDNI3L0D1 243 aa8.7□□□□□ -1.02
CCDC39-207ENST00000495817 AFMP43652 599 aa8.7□□□□□ -1.02
CCDC39-207ENST00000495817 PCBP3P57721 371 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms