RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 VCPKMTQ9H867 229 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 ORC3Q9UBD5 711 aaPredicted RBP13.25□□□□□ -0.29
MCF2L-231ENST00000494043 KIF3AQ9Y496 699 aa13.25□□□□□ -0.29
MCF2L-231ENST00000494043 UNCXA6NJT0 531 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 USP17L10C9JJH3 530 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 PPFIA3O75145 1194 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 CELF2O95319 508 aaKnown RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 FDPSP14324 419 aaKnown RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 SLC1A4P43007 532 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 USP14P54578 494 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 SSRP1Q08945 709 aaKnown RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 MTMR2Q13614 643 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 SLC35G1Q2M3R5 365 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 KIAA1755Q5JYT7 1200 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 TRIM22Q8IYM9 498 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 CCDC82Q8N4S0 544 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 FAM184AQ8NB25 1140 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 ZNF280CQ8ND82 737 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 CLMNQ96JQ2 1002 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 SPZ1Q9BXG8 430 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 RNF26Q9BY78 433 aaPredicted RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 ELP3Q9H9T3 547 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 GBA2Q9HCG7 927 aaPredicted RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 CIZ1Q9ULV3 898 aaPredicted RBP13.24□□□□□ -0.29
MCF2L-231ENST00000494043 ZHX2Q9Y6X8 837 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 PHIPQ8WWQ0 1821 aa13.24□□□□□ -0.29
MCF2L-231ENST00000494043 SPDYE5A6NIY4 337 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 UBE2Q2LH0YL09 131 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 PRPF3O43395 683 aaKnown RBP13.23□□□□□ -0.29
MCF2L-231ENST00000494043 BMP3P12645 472 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 SMARCA1P28370 1054 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 BACE1P56817 501 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 SPP2Q13103 211 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 ZYXQ15942 572 aaKnown RBP13.23□□□□□ -0.29
MCF2L-231ENST00000494043 KCTD1Q719H9 257 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 ERO1BQ86YB8 467 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 SPICE1Q8N0Z3 855 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 C2orf69Q8N8R5 385 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 LPAR1Q92633 364 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 NUP88Q99567 741 aaPredicted RBP13.23□□□□□ -0.29
MCF2L-231ENST00000494043 GPCPD1Q9NPB8 672 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 CHMP5Q9NZZ3 219 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 AFG3L2Q9Y4W6 797 aa13.23□□□□□ -0.29
MCF2L-231ENST00000494043 TRIM75PA6NK02 468 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 CYTH3O43739 400 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 DEXIO95424 95 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 PDCP20941 246 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 AKAP17AQ02040 695 aaKnown RBP13.22□□□□□ -0.29
MCF2L-231ENST00000494043 PPATQ06203 517 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 FAM83BQ5T0W9 1011 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 TTBK2Q6IQ55 1244 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 WASF1Q92558 559 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 C12orf42Q96LP6 360 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 CPVLQ9H3G5 476 aa13.22□□□□□ -0.29
MCF2L-231ENST00000494043 RBM27Q9P2N5 1060 aaKnown RBP13.22□□□□□ -0.29
MCF2L-231ENST00000494043 ISY1Q9ULR0 285 aaKnown RBP13.22□□□□□ -0.29
MCF2L-231ENST00000494043 PASKQ96RG2 1323 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 C19orf81C9J6K1 198 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 WDR46O15213 610 aaKnown RBP13.21□□□□□ -0.29
MCF2L-231ENST00000494043 SYT1P21579 422 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 PPIL2Q13356 520 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 PKN1Q16512 942 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 CST9Q5W186 159 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 LARP1BQ659C4 914 aaKnown RBP13.21□□□□□ -0.29
MCF2L-231ENST00000494043 BTNL9Q6UXG8 535 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 SMC1BQ8NDV3 1235 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 RBM46Q8TBY0 533 aaKnown RBP13.21□□□□□ -0.29
MCF2L-231ENST00000494043 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 OTUD5Q96G74 571 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 ALG1Q9BT22 464 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 UBA5Q9GZZ9 404 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 RIOX1Q9H6W3 641 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 EMILIN3Q9NT22 766 aa13.21□□□□□ -0.29
MCF2L-231ENST00000494043 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.21□□□□□ -0.29
MCF2L-231ENST00000494043 V9GY48 417 aaPredicted RBP13.21□□□□□ -0.29
MCF2L-231ENST00000494043 hCG_1642624A0A1W2PR95 340 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 TMEM232C9JQI7 657 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 STX6O43752 255 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 PLA2G6O60733 806 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 VCAM1P19320 739 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 YY1P25490 414 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 SLC16A2P36021 539 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 HMGCS2P54868 508 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 NUCB2P80303 420 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 DGKZQ13574 1117 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 PKP1Q13835 747 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 SH3D19Q5HYK7 790 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 SYDE2Q5VT97 1194 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 OPTNQ96CV9 577 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 RRP36Q96EU6 259 aaKnown RBP13.2□□□□□ -0.3
MCF2L-231ENST00000494043 AIFM3Q96NN9 605 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 TRPM7Q96QT4 1865 aa13.2□□□□□ -0.3
MCF2L-231ENST00000494043 CXCL11O14625 94 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 BRD1O95696 1058 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 SCG2P13521 617 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 PDIA4P13667 645 aaKnown RBP13.19□□□□□ -0.3
MCF2L-231ENST00000494043 STAT2P52630 851 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 FOSBP53539 338 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 IKQ13123 557 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-231ENST00000494043 PFKFB3Q16875 520 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms