RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 USP33Q8TEY7 942 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 SEC16BQ96JE7 1060 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC8Q9H0W5 538 aaPredicted RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CAAP1Q9H8G2 361 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 KCNQ5Q9NR82 932 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 TBC1D22BQ9NU19 505 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC87Q9NVE4 849 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PPARGC1AQ9UBK2 798 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CTNNA3Q9UI47 895 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PHTF1Q9UMS5 762 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 FAM50BQ9Y247 325 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 NOSIPQ9Y314 301 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 A0A1B0GVC2 190 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ABHD14A-ACY1A0A1B0GW23 586 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 hCG_1642624A0A1W2PR95 340 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PLOD2O00469 737 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ZBTB39O15060 712 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 BAG2O95816 211 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CD4P01730 458 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 KRT13P13646 458 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 MUTP22033 750 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 GARTP22102 1010 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CCT5P48643 541 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 MXI1P50539 228 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 EIF4G2P78344 907 aaKnown RBP eCLIP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 SKOR1P84550 965 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 MPP1Q00013 466 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 LRRC74AQ0VAA2 488 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 RASA2Q15283 850 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 TCEA2Q15560 299 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ATP13A4Q4VNC1 1196 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 METTL24Q5JXM2 366 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 SPDYCQ5MJ68 293 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 INTS11Q5TA45 600 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 USP51Q70EK9 711 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PLPP7Q8NBV4 271 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 LRRN4Q8WUT4 740 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ZNF606Q8WXB4 792 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 RTF1Q92541 710 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 RSRC1Q96IZ7 334 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 HIC2Q96JB3 615 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CAMKK2Q96RR4 588 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 YIPF4Q9BSR8 244 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ALG1Q9BT22 464 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC113Q9H0I3 377 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 KCTD10Q9H3F6 313 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 ELAC1Q9H777 363 aaKnown RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 BRMS1Q9HCU9 246 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 NKIRAS2Q9NYR9 191 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PDP2Q9P2J9 529 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 WDR35Q9P2L0 1181 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 LAMP5Q9UJQ1 280 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 DMTF1Q9Y222 760 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PLAAQ9Y263 795 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 TMEM98Q9Y2Y6 226 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 PCDHB3Q9Y5E6 796 aa4.82□□□□□ -1.64
BRCA1-220ENST00000492859 V9GYY5 206 aaPredicted RBP4.82□□□□□ -1.64
BRCA1-220ENST00000492859 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC66A2RUB6 948 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 F5H423 210 aaPredicted RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 M0QX08 132 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 PPEF1O14829 653 aaPredicted RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 NEMFO60524 1076 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 KINO60870 393 aaKnown RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 COBLO75128 1261 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TMEM127O75204 238 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 ZPR1O75312 459 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 RFPL1O75677 317 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 FGFR1OPO95684 399 aaKnown RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 HARSP12081 509 aaKnown RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 PHKG2P15735 406 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 NASPP49321 788 aaPredicted RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 SCNN1DP51172 638 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 CASP7P55210 303 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 PDE4BQ07343 736 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 NR1H3Q13133 447 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 G3BP1Q13283 466 aaKnown RBP eCLIP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 GALEQ14376 348 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TNIP1Q15025 636 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 SAFBQ15424 915 aaKnown RBP eCLIP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TAF7Q15545 349 aaPredicted RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 VWA3BQ502W6 1294 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 C2orf27AQ580R0 203 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TNNI3KQ59H18 835 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC178Q5BJE1 867 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 KIAA0319Q5VV43 1072 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 SPATA1Q5VX52 437 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 PDE12Q6L8Q7 609 aaKnown RBP4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TATDN1Q6P1N9 297 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 BTNL9Q6UXG8 535 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 ARHGEF18Q6ZSZ5 1173 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 RAPH1Q70E73 1250 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 RNF180Q86T96 592 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 LRRC49Q8IUZ0 686 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 TEX11Q8IYF3 940 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 MSANTD4Q8NCY6 345 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 SUN5Q8TC36 379 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 FNIP1Q8TF40 1166 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 POF1BQ8WVV4 589 aa4.81□□□□□ -1.64
BRCA1-220ENST00000492859 BAP1Q92560 729 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms