RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CCDC178Q5BJE1 867 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SAMD1Q6SPF0 538 aaPredicted RBP19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 MB21D1Q8N884 522 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ATG4CQ96DT6 458 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 GMCL1Q96IK5 515 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TTC14Q96N46 770 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TMEM47Q9BQJ4 181 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 FBXO28Q9NVF7 368 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 BTBD7Q9P203 1132 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ZSWIM5Q9P217 1185 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TAF6LQ9Y6J9 622 aa19.17■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 E7EWF7 191 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TNPO2O14787 897 aaKnown RBP19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 BMP3P12645 472 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 Q3C1V9 767 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 RCSD1Q6JBY9 416 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 RALYLQ86SE5 291 aaKnown RBP19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ABHD8Q96I13 439 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ZSCAN10Q96SZ4 725 aaPredicted RBP19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SLF1Q9BQI6 1058 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SRRDQ9UH36 339 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PPP1R9AQ9ULJ8 1098 aa19.16■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SLC27A2O14975 620 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 SLC1A4P43007 532 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 CCNA1P78396 465 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 NECTIN1Q15223 517 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 CREB3L3Q68CJ9 461 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 STOX1Q6ZVD7 989 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 DGKHQ86XP1 1220 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 NCOA7Q8NI08 942 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 COA7Q96BR5 231 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 UBAC1Q9BSL1 405 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 FEM1BQ9UK73 627 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 ISY1Q9ULR0 285 aaKnown RBP19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 HPS5Q9UPZ3 1129 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 MTMR7Q9Y216 660 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 PTCH2Q9Y6C5 1203 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 TNKSO95271 1327 aa19.15■□□□□ 0.66
MSH5-SAPCD1-206ENST00000491552 MCCP23508 829 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 MAPK4P31152 587 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PRKCZQ05513 592 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CYB5R4Q7L1T6 521 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CCAR1Q8IX12 1150 aaKnown RBP19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 DCAF4Q8WV16 495 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ADAMTS5Q9UNA0 930 aa19.14■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CCDC96Q2M329 555 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 RNF20Q5VTR2 975 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 RASGRP2Q7LDG7 609 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ENAHQ8N8S7 591 aaPredicted RBP19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PRPF38AQ8NAV1 312 aaKnown RBP19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ANKS1AQ92625 1134 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CHMP4CQ96CF2 233 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SPATC1LQ9H0A9 340 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PORCNQ9H237 461 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 GABRQQ9UN88 632 aa19.13■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 TMEM232C9JQI7 657 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 VWA5AO00534 786 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 STAT2P52630 851 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 IKQ13123 557 aaPredicted RBP19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 KCTD1Q719H9 257 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 FAM160B2Q86V87 743 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 RAET1EQ8TD07 263 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 KIFC2Q96AC6 838 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 KAT14Q9H8E8 782 aa19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CWC22Q9HCG8 908 aaKnown RBP19.12■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 COL11A1P12107 1806 aaPredicted RBP19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 REC8O95072 547 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PDHBP11177 359 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PLS1Q14651 629 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 TMEM132BQ14DG7 1078 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 GPR142Q7Z601 462 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PLEKHH3Q7Z736 793 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 MB21D2Q8IYB1 491 aaPredicted RBP19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PNMA1Q8ND90 353 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 REPS2Q8NFH8 660 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CHURC1Q8WUH1 139 aa19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 MOV10L1Q9BXT6 1211 aaKnown RBP19.11■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 PLA2G6O60733 806 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ZBED4O75132 1171 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 FLT3LGP49771 235 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SART3Q15020 963 aaKnown RBP19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SEC23AQ15436 765 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 IFIT1BQ5T764 474 aaKnown RBP19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 WDR78Q5VTH9 848 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SHCBP1Q8NEM2 672 aa19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 CTDP1Q9Y5B0 961 aaPredicted RBP19.1■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 FRMPD2Q68DX3 1309 aaPredicted RBP19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ERICH2A1L162 156 aa19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 IFIT3O14879 490 aaKnown RBP19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SNHG28P0DPA3 235 aa19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 IRF5Q13568 498 aa19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SLC9C1Q4G0N8 1177 aa19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SOCS4Q8WXH5 440 aa19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 ZNF214Q9UL59 606 aaPredicted RBP19.09■□□□□ 0.65
MSH5-SAPCD1-206ENST00000491552 SLC25A27O95847 323 aa19.08■□□□□ 0.64
MSH5-SAPCD1-206ENST00000491552 FDX1P10109 184 aa19.08■□□□□ 0.64
MSH5-SAPCD1-206ENST00000491552 ERCC3P19447 782 aa19.08■□□□□ 0.64
MSH5-SAPCD1-206ENST00000491552 ANTXR2P58335 489 aa19.08■□□□□ 0.64
MSH5-SAPCD1-206ENST00000491552 ZNF543Q08ER8 600 aa19.08■□□□□ 0.64
MSH5-SAPCD1-206ENST00000491552 CHST3Q7LGC8 479 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms