RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 C8orf76Q96K31 380 aa18.44■□□□□ 0.54
SYNE1-227ENST00000489156 USP17L5A8MUK1 530 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 FMNL1O95466 1100 aaPredicted RBP18.43■□□□□ 0.54
SYNE1-227ENST00000489156 EEF2P13639 858 aaKnown RBP18.43■□□□□ 0.54
SYNE1-227ENST00000489156 ICA1Q05084 483 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 SLC10A4Q96EP9 437 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 CLIP2Q9UDT6 1046 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 ZHX2Q9Y6X8 837 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 PRPF40AO75400 957 aaKnown RBP18.43■□□□□ 0.54
SYNE1-227ENST00000489156 KLHL40Q2TBA0 621 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 KAT14Q9H8E8 782 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 ABT1Q9ULW3 272 aaKnown RBP18.43■□□□□ 0.54
SYNE1-227ENST00000489156 TCHHQ07283 1943 aa18.43■□□□□ 0.54
SYNE1-227ENST00000489156 UNCXA6NJT0 531 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 TTLL1O95922 423 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 NOVP48745 357 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 FERMT3Q86UX7 667 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 ACER1Q8TDN7 264 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 TLL2Q9Y6L7 1015 aa18.42■□□□□ 0.54
SYNE1-227ENST00000489156 A0A1W2PRG0 241 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 KIF5BP33176 963 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 ECE1P42892 770 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 APLP1P51693 650 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 KRT85P78386 507 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 RESTQ13127 1097 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 NBPF11Q86T75 865 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 ERO1BQ86YB8 467 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 CTCFLQ8NI51 663 aaPredicted RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 PHKBQ93100 1093 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 OTUD5Q96G74 571 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 RNF26Q9BY78 433 aaPredicted RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 NYAP2Q9P242 653 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 PPFIA3O75145 1194 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 DNM1Q05193 864 aaKnown RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 SPP2Q13103 211 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 FOXD4L6Q3SYB3 417 aaPredicted RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 ATL3Q6DD88 541 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 FOXD4L3Q6VB84 417 aaPredicted RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 OPTNQ96CV9 577 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 CHAMP1Q96JM3 812 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 ALG1Q9BT22 464 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 SLC26A6Q9BXS9 759 aa18.41■□□□□ 0.54
SYNE1-227ENST00000489156 DDX49Q9Y6V7 483 aaKnown RBP18.41■□□□□ 0.54
SYNE1-227ENST00000489156 PTPRFP10586 1907 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 SPDYE5A6NIY4 337 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 DEXIO95424 95 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 LRRC47Q8N1G4 583 aaKnown RBP18.4■□□□□ 0.54
SYNE1-227ENST00000489156 ZNF280CQ8ND82 737 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 PNMA1Q8ND90 353 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 TMEM47Q9BQJ4 181 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 SCAND2PQ9GZW5 306 aaPredicted RBP18.4■□□□□ 0.54
SYNE1-227ENST00000489156 AS3MTQ9HBK9 375 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 ARHGEF10LQ9HCE6 1279 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 CNPY2Q9Y2B0 182 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 AFG3L2Q9Y4W6 797 aa18.4■□□□□ 0.54
SYNE1-227ENST00000489156 TRIM75PA6NK02 468 aa18.39■□□□□ 0.54
SYNE1-227ENST00000489156 PPATQ06203 517 aa18.39■□□□□ 0.54
SYNE1-227ENST00000489156 PPP4R3BQ5MIZ7 849 aa18.39■□□□□ 0.54
SYNE1-227ENST00000489156 WDR18Q9BV38 432 aa18.39■□□□□ 0.54
SYNE1-227ENST00000489156 IRF6O14896 467 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 MBD3O95983 291 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 TOP1P11387 765 aaKnown RBP18.39■□□□□ 0.53
SYNE1-227ENST00000489156 NCLP19338 710 aaKnown RBP18.39■□□□□ 0.53
SYNE1-227ENST00000489156 GJA5P36382 358 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 ZNF157P51786 506 aaPredicted RBP18.39■□□□□ 0.53
SYNE1-227ENST00000489156 FUT2Q10981 343 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 ZYXQ15942 572 aaKnown RBP18.39■□□□□ 0.53
SYNE1-227ENST00000489156 MKL1Q969V6 931 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 CFAP45Q9UL16 551 aa18.39■□□□□ 0.53
SYNE1-227ENST00000489156 PRPF3O43395 683 aaKnown RBP18.38■□□□□ 0.53
SYNE1-227ENST00000489156 ELP1O95163 1332 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 GNAQP50148 359 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 AKAP17AQ02040 695 aaKnown RBP18.38■□□□□ 0.53
SYNE1-227ENST00000489156 MKRN3Q13064 507 aaKnown RBP18.38■□□□□ 0.53
SYNE1-227ENST00000489156 TRIM29Q14134 588 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 RGMBQ6NW40 437 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 TMTC3Q6ZXV5 915 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 BRAPQ7Z569 592 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 FEZ1Q99689 392 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 CREBZFQ9NS37 354 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 MTMR7Q9Y216 660 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 TMX2Q9Y320 296 aa18.38■□□□□ 0.53
SYNE1-227ENST00000489156 USP17L10C9JJH3 530 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 RAD21O60216 631 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 DGKZQ13574 1117 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 MTMR2Q13614 643 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 WNK4Q96J92 1243 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 RBM27Q9P2N5 1060 aaKnown RBP18.37■□□□□ 0.53
SYNE1-227ENST00000489156 BACE1P56817 501 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 PPIL2Q13356 520 aa18.37■□□□□ 0.53
SYNE1-227ENST00000489156 GUCY1B3Q02153 619 aa18.36■□□□□ 0.53
SYNE1-227ENST00000489156 GRM4Q14833 912 aa18.36■□□□□ 0.53
SYNE1-227ENST00000489156 KRT40Q6A162 431 aa18.36■□□□□ 0.53
SYNE1-227ENST00000489156 KIAA1683Q9H0B3 1180 aa18.36■□□□□ 0.53
SYNE1-227ENST00000489156 GDPD2Q9HCC8 539 aa18.36■□□□□ 0.53
SYNE1-227ENST00000489156 F5H6K3 240 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 FIBPO43427 364 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 XBP1P17861 261 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 FOSBP53539 338 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 HMGCS2P54868 508 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms