RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 C19orf44Q9H6X5 657 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 GOLGA2P5Q9HBQ8 144 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.03□□□□□ -1.12
PTPN4-212ENST00000488896 FKTNO75072 461 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 GLI1P08151 1106 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 ZGLP1P0C6A0 271 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 RPL10P27635 214 aaKnown RBP8.02□□□□□ -1.13
PTPN4-212ENST00000488896 TEKQ02763 1124 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 USHBP1Q8N6Y0 703 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 SYTL5Q8TDW5 730 aaPredicted RBP8.02□□□□□ -1.13
PTPN4-212ENST00000488896 ZNF428Q96B54 188 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 GPRASP2Q96D09 838 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 CRBNQ96SW2 442 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 FOXP3Q9BZS1 431 aa8.02□□□□□ -1.13
PTPN4-212ENST00000488896 C9IYK1 514 aa8.01□□□□□ -1.13
PTPN4-212ENST00000488896 ZYXQ15942 572 aaKnown RBP8.01□□□□□ -1.13
PTPN4-212ENST00000488896 CCDC144CPQ8IYA2 1237 aa8.01□□□□□ -1.13
PTPN4-212ENST00000488896 DAGLBQ8NCG7 672 aa8.01□□□□□ -1.13
PTPN4-212ENST00000488896 ENOX1Q8TC92 643 aaKnown RBP8.01□□□□□ -1.13
PTPN4-212ENST00000488896 DHRS1Q96LJ7 313 aa8.01□□□□□ -1.13
PTPN4-212ENST00000488896 GFOD1Q9NXC2 390 aa8.01□□□□□ -1.13
PTPN4-212ENST00000488896 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 TP53P04637 393 aaPredicted RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 SYPP08247 313 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 AUHQ13825 339 aaKnown RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 INTS3Q68E01 1043 aaKnown RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 WAPLQ7Z5K2 1190 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 LSRQ86X29 649 aaPredicted RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 POU5F2Q8N7G0 328 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 DHX38Q92620 1227 aaKnown RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 TM9SF2Q99805 663 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 KRTAP4-12Q9BQ66 201 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 ACBD3Q9H3P7 528 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 CHST7Q9NS84 486 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 SUCOQ9UBS9 1254 aaKnown RBP8□□□□□ -1.13
PTPN4-212ENST00000488896 ZMYM5Q9UJ78 669 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 TCFL5Q9UL49 500 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 PCDHB12Q9Y5F1 795 aa8□□□□□ -1.13
PTPN4-212ENST00000488896 SIGLEC6O43699 453 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 HPXP02790 462 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 GUCY2CP25092 1073 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 PCBP3P57721 371 aaKnown RBP7.99□□□□□ -1.13
PTPN4-212ENST00000488896 UNC5AQ6ZN44 842 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 RNF111Q6ZNA4 994 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 PRR23BQ6ZRT6 265 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 ZNF655Q8N720 491 aaPredicted RBP7.99□□□□□ -1.13
PTPN4-212ENST00000488896 PDZD8Q8NEN9 1154 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 DIRC2Q96SL1 478 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 CCSER2Q9H7U1 834 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 EBF1Q9UH73 591 aa7.99□□□□□ -1.13
PTPN4-212ENST00000488896 FARP2O94887 1054 aaPredicted RBP7.98□□□□□ -1.13
PTPN4-212ENST00000488896 NASPP49321 788 aaPredicted RBP7.98□□□□□ -1.13
PTPN4-212ENST00000488896 EIF6P56537 245 aaKnown RBP7.98□□□□□ -1.13
PTPN4-212ENST00000488896 TIGD5Q53EQ6 642 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 ZPBP2Q6X784 338 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 OXR1Q8N573 874 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 CPLX3Q8WVH0 158 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 FAM53CQ9NYF3 392 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 INPP5FQ9Y2H2 1132 aa7.98□□□□□ -1.13
PTPN4-212ENST00000488896 C8AP07357 584 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 SOX9P48436 509 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 GALK1P51570 392 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 PMS1P54277 932 aaKnown RBP7.97□□□□□ -1.13
PTPN4-212ENST00000488896 DUSP4Q13115 394 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 COL9A2Q14055 689 aaPredicted RBP7.97□□□□□ -1.13
PTPN4-212ENST00000488896 ZNF124Q15973 351 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 DCAF15Q66K64 600 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 PPFIBP1Q86W92 1011 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 KRTAP19-1Q8IUB9 90 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 C7orf61Q8IZ16 206 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 RBBP8NLQ8NC74 664 aaPredicted RBP7.97□□□□□ -1.13
PTPN4-212ENST00000488896 SPATA32Q96LK8 384 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 DSCC1Q9BVC3 393 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 SRRTQ9BXP5 876 aaKnown RBP7.97□□□□□ -1.13
PTPN4-212ENST00000488896 RNF32Q9H0A6 362 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 KCNK12Q9HB15 430 aa7.97□□□□□ -1.13
PTPN4-212ENST00000488896 FITM1A5D6W6 292 aa7.96□□□□□ -1.14
PTPN4-212ENST00000488896 USP2O75604 605 aaPredicted RBP7.96□□□□□ -1.14
PTPN4-212ENST00000488896 AXDND1Q5T1B0 1012 aaPredicted RBP7.96□□□□□ -1.14
PTPN4-212ENST00000488896 KSR1Q8IVT5 923 aa7.96□□□□□ -1.14
PTPN4-212ENST00000488896 TAB3Q8N5C8 712 aaPredicted RBP7.96□□□□□ -1.14
PTPN4-212ENST00000488896 TGIF2Q9GZN2 237 aa7.96□□□□□ -1.14
PTPN4-212ENST00000488896 NSUN3Q9H649 340 aaKnown RBP7.96□□□□□ -1.14
PTPN4-212ENST00000488896 GPR160Q9UJ42 338 aa7.96□□□□□ -1.14
PTPN4-212ENST00000488896 GJA8P48165 433 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 RBM25P49756 843 aaKnown RBP7.95□□□□□ -1.14
PTPN4-212ENST00000488896 PPP2R5EQ16537 467 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 BBS9Q3SYG4 887 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 CRTC3Q6UUV7 619 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 LINC00116Q8NCU8 138 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 RASGRP4Q8TDF6 673 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 BRF1Q92994 677 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 SP110Q9HB58 689 aa7.95□□□□□ -1.14
PTPN4-212ENST00000488896 TMEM82A0PJX8 343 aa7.94□□□□□ -1.14
PTPN4-212ENST00000488896 SHOXO15266 292 aa7.94□□□□□ -1.14
PTPN4-212ENST00000488896 YBX3P16989 372 aaKnown RBP eCLIP7.94□□□□□ -1.14
PTPN4-212ENST00000488896 ERCC5P28715 1186 aaPredicted RBP7.94□□□□□ -1.14
PTPN4-212ENST00000488896 CTSKP43235 329 aa7.94□□□□□ -1.14
PTPN4-212ENST00000488896 NOL9Q5SY16 702 aaKnown RBP7.94□□□□□ -1.14
PTPN4-212ENST00000488896 SPPL2CQ8IUH8 684 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms