RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 MYH15Q9Y2K3 1946 aa12.41□□□□□ -0.42
USP11-209ENST00000488848 KLRF2D3W0D1 207 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 WDR46O15213 610 aaKnown RBP12.4□□□□□ -0.42
USP11-209ENST00000488848 USP14P54578 494 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 PKP1Q13835 747 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 SLFN13Q68D06 897 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 PPP1R18Q6NYC8 613 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 ANKRD13AQ8IZ07 590 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 FAM184AQ8NB25 1140 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 RBM46Q8TBY0 533 aaKnown RBP12.4□□□□□ -0.42
USP11-209ENST00000488848 ACER1Q8TDN7 264 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 AS3MTQ9HBK9 375 aa12.4□□□□□ -0.42
USP11-209ENST00000488848 ESYT2A0FGR8 921 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 SPDYE5A6NIY4 337 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 C19orf81C9J6K1 198 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 BMP3P12645 472 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 ECE1P42892 770 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 SLC1A4P43007 532 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 BACE1P56817 501 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 PPATQ06203 517 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 VGLL4Q14135 290 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 GALNT17Q6IS24 598 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 USP17L2Q6R6M4 530 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 RAB11FIP4Q86YS3 637 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 CCDC144CPQ8IYA2 1237 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 ZNF280CQ8ND82 737 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 PHKBQ93100 1093 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 GLIS2Q9BZE0 524 aaPredicted RBP12.39□□□□□ -0.43
USP11-209ENST00000488848 ZSCAN16Q9H4T2 348 aaPredicted RBP12.39□□□□□ -0.43
USP11-209ENST00000488848 PICK1Q9NRD5 415 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 NAP1L2Q9ULW6 460 aaPredicted RBP12.39□□□□□ -0.43
USP11-209ENST00000488848 SCAF8Q9UPN6 1271 aaKnown RBP12.39□□□□□ -0.43
USP11-209ENST00000488848 KCNH4Q9UQ05 1017 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 AFG3L2Q9Y4W6 797 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 A0A0G2JMZ2 1700 aa12.39□□□□□ -0.43
USP11-209ENST00000488848 MYPNQ86TC9 1320 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 USP17L10C9JJH3 530 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 ITGBL1O95965 494 aaPredicted RBP12.38□□□□□ -0.43
USP11-209ENST00000488848 F13A1P00488 732 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 POTEIP0CG38 1075 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 POTEJP0CG39 1038 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 FDX1P10109 184 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 SCG2P13521 617 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 U2AF2P26368 475 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP11-209ENST00000488848 NPY5RQ15761 445 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 EAPPQ56P03 285 aaPredicted RBP12.38□□□□□ -0.43
USP11-209ENST00000488848 ATL3Q6DD88 541 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 FAM160B2Q86V87 743 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 DAGLBQ8NCG7 672 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 SPRYD3Q8NCJ5 442 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 C8orf76Q96K31 380 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 ALG1Q9BT22 464 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 SLC26A6Q9BXS9 759 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 RRAGCQ9HB90 399 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 FOXD4L1Q9NU39 408 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 BARHL2Q9NY43 387 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 ATP6V1DQ9Y5K8 247 aa12.38□□□□□ -0.43
USP11-209ENST00000488848 MORC2Q9Y6X9 1032 aaPredicted RBP12.38□□□□□ -0.43
USP11-209ENST00000488848 CXCL11O14625 94 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 XBP1P17861 261 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 RESTQ13127 1097 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 PPIL2Q13356 520 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 KIAA1755Q5JYT7 1200 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 PRAMEF18Q5VWM3 479 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 CHADLQ6NUI6 762 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 RASGRP2Q7LDG7 609 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 BRAPQ7Z569 592 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 ERO1BQ86YB8 467 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 TNPO1Q92973 898 aaKnown RBP12.37□□□□□ -0.43
USP11-209ENST00000488848 ZKSCAN4Q969J2 545 aaPredicted RBP12.37□□□□□ -0.43
USP11-209ENST00000488848 SHISA4Q96DD7 197 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 DDX11Q96FC9 970 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 PHF20Q9BVI0 1012 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 MAF1Q9H063 256 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 JMJD4Q9H9V9 463 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 NMRK2Q9NPI5 230 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 PNMA2Q9UL42 364 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 V9GY48 417 aaPredicted RBP12.37□□□□□ -0.43
USP11-209ENST00000488848 PASKQ96RG2 1323 aa12.37□□□□□ -0.43
USP11-209ENST00000488848 PNMA6FA0A0J9YX94 578 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 ZBTB5O15062 677 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 MMP1P03956 469 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 STAT2P52630 851 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 AKAP17AQ02040 695 aaKnown RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 KIF23Q02241 960 aaPredicted RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 TRAF1Q13077 416 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 KRT40Q6A162 431 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 ARMC9Q7Z3E5 817 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 TMEM87AQ8NBN3 555 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 PROCA1Q8NCQ7 364 aaPredicted RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 CCDC148Q8NFR7 591 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 CHURC1Q8WUH1 139 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 RRP36Q96EU6 259 aaKnown RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 ZMYND12Q9H0C1 365 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 RANBP17Q9H2T7 1088 aaKnown RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 FOXP1Q9H334 677 aaPredicted RBP12.36□□□□□ -0.43
USP11-209ENST00000488848 EMILIN3Q9NT22 766 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 FEM1BQ9UK73 627 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 CSADQ9Y600 493 aa12.36□□□□□ -0.43
USP11-209ENST00000488848 A0A0G2JLL6 359 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms