RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 GDF15Q99988 308 aa10.61□□□□□ -0.71
USP4-213ENST00000488520 HMX1Q9NP08 348 aaPredicted RBP10.61□□□□□ -0.71
USP4-213ENST00000488520 PCDHB15Q9Y5E8 787 aa10.61□□□□□ -0.71
USP4-213ENST00000488520 RPTORQ8N122 1335 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 A0A1B0GUL7 405 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 CAPN2P17655 700 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 BMP8BP34820 402 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 GCLCP48506 637 aaPredicted RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 RHBDL3P58872 404 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 RRP1BQ14684 758 aaKnown RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 TBC1D9Q6ZT07 1266 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 ZNF280CQ8ND82 737 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 ZNF384Q8TF68 577 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 TRIB2Q92519 343 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 EMID1Q96A84 441 aaPredicted RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 KIF1BPQ96EK5 621 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 XAGE2Q96GT9 111 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 CCDC136Q96JN2 1154 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 OSBPL5Q9H0X9 879 aaPredicted RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 ASCC2Q9H1I8 757 aaPredicted RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 GJD2Q9UKL4 321 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 EXOC6BQ9Y2D4 811 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 NOP58Q9Y2X3 529 aaKnown RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 FCF1Q9Y324 198 aaKnown RBP10.6□□□□□ -0.71
USP4-213ENST00000488520 LTBP2Q14767 1821 aa10.6□□□□□ -0.71
USP4-213ENST00000488520 PLXNA1Q9UIW2 1896 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 MYO9BQ13459 2157 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 COL11A1P12107 1806 aaPredicted RBP10.59□□□□□ -0.71
USP4-213ENST00000488520 GPR75-ASB3A0A0A6YYF3 556 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 MOXD2PA6NHM9 499 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 MAGEA10P43363 369 aaPredicted RBP10.59□□□□□ -0.71
USP4-213ENST00000488520 TFCP2Q12800 502 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 PABPC4Q13310 644 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP4-213ENST00000488520 HDAC1Q13547 482 aaPredicted RBP10.59□□□□□ -0.71
USP4-213ENST00000488520 PLA2G2CQ5R387 149 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 PI16Q6UXB8 463 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 LIAT1Q6ZQX7 453 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 CLASRPQ8N2M8 674 aaKnown RBP10.59□□□□□ -0.71
USP4-213ENST00000488520 TBC1D2Q9BYX2 928 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 LRRCC1Q9C099 1032 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 C11orf49Q9H6J7 331 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 DCTPP1Q9H773 170 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.59□□□□□ -0.71
USP4-213ENST00000488520 EYSQ5T1H1 3165 aa10.59□□□□□ -0.71
USP4-213ENST00000488520 USP17L5A8MUK1 530 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 IFIT2P09913 472 aaKnown RBP10.58□□□□□ -0.72
USP4-213ENST00000488520 NDUFV2P19404 249 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 CAP2P40123 477 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 MMP16P51512 607 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 CCDC158Q5M9N0 1113 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 ANKRD45Q5TZF3 282 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 SIRT2Q8IXJ6 389 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 TDHQ8IZJ6 230 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 P2RX7Q99572 595 aaKnown RBP10.58□□□□□ -0.72
USP4-213ENST00000488520 UBE2OQ9C0C9 1292 aaKnown RBP10.58□□□□□ -0.72
USP4-213ENST00000488520 RAI14Q9P0K7 980 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 HMG20BQ9P0W2 317 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 PCDHGC3Q9UN70 934 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 PFASO15067 1338 aa10.58□□□□□ -0.72
USP4-213ENST00000488520 LDHCP07864 332 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 IRX3P78415 501 aaPredicted RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 MTMR2Q13614 643 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 SHROOM1Q2M3G4 852 aaPredicted RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 B4GALNT3Q6L9W6 998 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 RETREG3Q86VR2 466 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 TEX11Q8IYF3 940 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 RHPN1Q8TCX5 695 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 SH3RF3Q8TEJ3 882 aaPredicted RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 SYMPKQ92797 1274 aaKnown RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 NSUN4Q96CB9 384 aaKnown RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 NUDT12Q9BQG2 462 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 AS3MTQ9HBK9 375 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 GPR108Q9NPR9 543 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 MTMR10Q9NXD2 777 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 PPP4R2Q9NY27 417 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 OGDHLQ9ULD0 1010 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 NAV1Q8NEY1 1877 aa10.57□□□□□ -0.72
USP4-213ENST00000488520 PDS5AQ29RF7 1337 aaKnown RBP10.57□□□□□ -0.72
USP4-213ENST00000488520 BAZ2AQ9UIF9 1905 aaKnown RBP10.56□□□□□ -0.72
USP4-213ENST00000488520 PARP14Q460N5 1801 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 GSTO1P78417 241 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 JAG1P78504 1218 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 CACNB2Q08289 660 aaPredicted RBP10.56□□□□□ -0.72
USP4-213ENST00000488520 LAPTM4AQ15012 233 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 SH3D19Q5HYK7 790 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 SPATA5Q8NB90 893 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 GPATCH3Q96I76 525 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 PAGR1Q9BTK6 254 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 TXNRD2Q9NNW7 524 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 TMOD4Q9NZQ9 345 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 MORF4L1Q9UBU8 362 aa10.56□□□□□ -0.72
USP4-213ENST00000488520 COL2A1P02458 1487 aaPredicted RBP10.55□□□□□ -0.72
USP4-213ENST00000488520 PRUNE2Q8WUY3 3088 aa10.55□□□□□ -0.72
USP4-213ENST00000488520 DXOO77932 396 aaKnown RBP10.55□□□□□ -0.72
USP4-213ENST00000488520 GDF11O95390 407 aa10.55□□□□□ -0.72
USP4-213ENST00000488520 IGHDP01880 384 aa10.55□□□□□ -0.72
USP4-213ENST00000488520 CCND3P30281 292 aaPredicted RBP10.55□□□□□ -0.72
USP4-213ENST00000488520 HERVK_113P62684 666 aa10.55□□□□□ -0.72
USP4-213ENST00000488520 CCL14Q16627 93 aa10.55□□□□□ -0.72
USP4-213ENST00000488520 LRRC26Q2I0M4 334 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms